Setting up a Solaris training Post: 302248810

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LEARN ABOUT DEBIAN

bp_heterogeneity_test

BP_HETEROGENEITY_TEST(1p)				User Contributed Perl Documentation				 BP_HETEROGENEITY_TEST(1p)

NAME

       heterogeneity_test - a test for distinguishing between selection and population expansion.

SYNOPSIS

       heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mutnon nonsyn_mut_count -s/--smaplesize sample_size [-i/--iterations
       iterations] [-o/--observed observed_D] [-v/--verbose] [--silent ] [-m/--method tajimaD or fuD] [--precision]

   DESCRIPTION
       This is an implementation of the Heterogenetity test as described in Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.

   OPTIONS
	Options in brackets above are optional

	-s or --samplesize samplesize
	-mut_1 or --mutsyn synonymous mutation count
	-mut_2 or --mutnon nonsynonmous mutation count
	-i or --iterations number of iterations
	-o or --observed   observed D
	-m or --method	   tajimaD or fuD  for Tajima's D or Fu and Li's D
	-v or --verbose    print out extra verbose messages
	--silent	   Be extra quiet
	--precision	   Level of precision - specify the number of digits
			  (default 4)

   AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
       For more information contact:

       Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>

perl v5.14.2							    2012-03-02						 BP_HETEROGENEITY_TEST(1p)