Hi All,
I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations:
1. I am restrained to 2 input files only.
2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Dear all
I have big file with two columns
A_AA960715 GO:0006952
A_AA960715 GO:0008152
A_AA960715 GO:0016491
A_AA960715 GO:0007165
A_AA960715 GO:0005618
A_AA960716 GO:0006952
A_AA960716 GO:0005618
A_AA960716... (15 Replies)
Hi,
I have two files that I would like to merge and think that there should be a solution using awk. The files look something like this:
file 1
IDX1 IDY1
IDX2 IDY2
IDX3 IDY3
file 2
IDY1 dataA data1
IDY2 dataB data2
IDY3 dataC data3
Desired output
IDX1 IDY1 dataA data1
IDX2 ... (5 Replies)
I have two files
1.txt
34, ABC, 7, 8, 0.9
35, CDE, 6.5, -2, 0.01
2.txt
34, ABC, 9, 6, -1.9
35, CDE, 8.5, -2.3, 5.01
So in both files common columns are 1 and 2
so final o/p should look like
34, ABC, 7, 8, 0.9, 9, 6, -1.9
35, CDE, 6.5, -2, 0.01, 8.5, -2.3, 5.01
I tried using... (3 Replies)
I have the following records from multiple files.
415 A G
415 A G
415 A T
415 A .
415 A .
421 G A
421 G A,C
421 G A
421 G A
421 G A,C
421 G .
427 A C
427 A ... (3 Replies)
hi i have two files and i wanted to join them using common column. try to do this using "join" command but that did not help.
File 1:
123 9a.vcf hy92.vcf hy90.vcf
Index Ref Alt Ref Alt Ref Alt
315 14 0 7 4 ... (6 Replies)
Hi,
I have two files A (2190 rows) and file B (1100 rows). I want to merge the contents of two files based on common field, also I need the unmatched rows from file A
file A:
ABC
XYZ
PQR
file B:
>LMN|chr1:11000-12456:
>ABC|chr15:176578-187678:
>PQR|chr3:14567-15866:
output... (3 Replies)
Hi All,
I have 4 files in below format. I took them as an example.
File 1: Cut from position 1-4 then 6-7 then 8-14 then rest left and make them as columns in one new file. Inserting character H to the initial of all line like HCTOT.
CTOT 456787897 Low fever
CTOR 556712345 High fever... (2 Replies)
Hi, I am trying to selectively merge two files based on keys reported in the 1st column.
File1:
#file1-header1
file1-header2
111 qwe rtz uio
198 asd fgh jkl
165 yxc
789 poi uzt rew
89 lkj
File2:
#file2-header2
file2-header2
165 ghz nko2 ... (2 Replies)
Discussion started by: dovah
2 Replies
LEARN ABOUT DEBIAN
column
COLUMN(1) BSD General Commands Manual COLUMN(1)NAME
column -- columnate lists
SYNOPSIS
column [-entx] [-c columns] [-s sep] [file ...]
DESCRIPTION
The column utility formats its input into multiple columns. Rows are filled before columns. Input is taken from file operands, or, by
default, from the standard input. Empty lines are ignored unless the -e option is used.
The options are as follows:
-c Output is formatted for a display columns wide.
-s Specify a set of characters to be used to delimit columns for the -t option.
-t Determine the number of columns the input contains and create a table. Columns are delimited with whitespace, by default, or with
the characters supplied using the -s option. Useful for pretty-printing displays.
-x Fill columns before filling rows.
-n By default, the column command will merge multiple adjacent delimiters into a single delimiter when using the -t option; this option
disables that behavior. This option is a Debian GNU/Linux extension.
-e Do not ignore empty lines.
ENVIRONMENT
The COLUMNS, LANG, LC_ALL and LC_CTYPE environment variables affect the execution of column as described in environ(7).
EXIT STATUS
The column utility exits 0 on success, and >0 if an error occurs.
EXAMPLES
(printf "PERM LINKS OWNER GROUP SIZE MONTH DAY " ;
printf "HH:MM/YEAR NAME
" ;
ls -l | sed 1d) | column -t
SEE ALSO colrm(1), ls(1), paste(1), sort(1)HISTORY
The column command appeared in 4.3BSD-Reno.
BUGS
Input lines are limited to LINE_MAX (2048) bytes in length.
BSD July 29, 2004 BSD