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Top Forums Programming selecting rows with specific IDs for downstream analysis Post 302241985 by labrazil on Wednesday 1st of October 2008 12:39:18 AM
Old 10-01-2008
selecting rows with specific IDs for downstream analysis

Hi,

I'm working hard on SQL and I came across a hurdle I'm hoping you can help me out with.

I have two tables

table1
headers: chrom start end name score strand
Code:
11   9720685 9720721 U0      0       +
21   9721043 9721079 U0      0       -
1   9721093 9721129 U0      0       +
20   9721485 9721521 U0      0       +
22   9721863 9721899 U0      0       -
21   9721863 9721899 U0      0       -
21   9721871 9721907 U0      0       -
21   9721872 9721908 U0      0       +
5   9722423 9722459 U0      0       +
4   9722434 9722470 U0      0       +

and table 2
headers: chrom start end name score strand
Code:
21   9719765 9749365 DOM1158 61.7441 +
21   10056465        10211865        DOM1159 321.867 +
1   31678598        31859898        DOM1160 73.8664 +
21   32133698        32300198        DOM1161 152.658 +
3   32599898        32910698        DOM1162 435.853 +
21   33177098        33447198        DOM1163 326.637 +
2   33669198        33728398        DOM1164 46.8648 +
21   33824598        34013298        DOM1165 116.821 +
20   34120598        34246398        DOM1166 197.878 +
20   34412898        34505398        DOM1167 98.2537 +

both tables contain 100+ entries and column one has numbers from 1-22.

my objective is to try to run this command

>select count(*) from table1, table2 where table1.start >= table2.start and table1.end <= table2.end;

but I want to get the information for rows matching chrom=21 only.

I've tried group by and then having, but it doesn't seem to work.


Can someone help me out? Thanks.
 

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SAVEPOINT(7)                                                       SQL Commands                                                       SAVEPOINT(7)

NAME
SAVEPOINT - define a new savepoint within the current transaction SYNOPSIS
SAVEPOINT savepoint_name DESCRIPTION
SAVEPOINT establishes a new savepoint within the current transaction. A savepoint is a special mark inside a transaction that allows all commands that are executed after it was established to be rolled back, restoring the transaction state to what it was at the time of the savepoint. PARAMETERS
savepoint_name The name to give to the new savepoint. NOTES
Use ROLLBACK TO SAVEPOINT [rollback_to_savepoint(7)] to rollback to a savepoint. Use RELEASE SAVEPOINT [release_savepoint(7)] to destroy a savepoint, keeping the effects of commands executed after it was established. Savepoints can only be established when inside a transaction block. There can be multiple savepoints defined within a transaction. EXAMPLES
To establish a savepoint and later undo the effects of all commands executed after it was established: BEGIN; INSERT INTO table1 VALUES (1); SAVEPOINT my_savepoint; INSERT INTO table1 VALUES (2); ROLLBACK TO SAVEPOINT my_savepoint; INSERT INTO table1 VALUES (3); COMMIT; The above transaction will insert the values 1 and 3, but not 2. To establish and later destroy a savepoint: BEGIN; INSERT INTO table1 VALUES (3); SAVEPOINT my_savepoint; INSERT INTO table1 VALUES (4); RELEASE SAVEPOINT my_savepoint; COMMIT; The above transaction will insert both 3 and 4. COMPATIBILITY
SQL requires a savepoint to be destroyed automatically when another savepoint with the same name is established. In PostgreSQL, the old savepoint is kept, though only the more recent one will be used when rolling back or releasing. (Releasing the newer savepoint will cause the older one to again become accessible to ROLLBACK TO SAVEPOINT and RELEASE SAVEPOINT.) Otherwise, SAVEPOINT is fully SQL conforming. SEE ALSO
BEGIN [begin(7)], COMMIT [commit(7)], RELEASE SAVEPOINT [release_savepoint(7)], ROLLBACK [rollback(7)], ROLLBACK TO SAVEPOINT [roll- back_to_savepoint(7)] SQL - Language Statements 2010-05-14 SAVEPOINT(7)
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