I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
Result expected is : Pattern1 ... (7 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
tried using awk but double quotes not preserving for every field. any help to solve this is much... (5 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT MINIX
cp
CP(1) General Commands Manual CP(1)NAME
cp, cpdir - file copy
SYNOPSIS
cp [-pifsmrRvx] file1 file2
cp [-pifsrRvx] file ... directory
cpdir [-ifvx] file1 file2
OPTIONS -p Preserve full mode, uid, gid and times
-i Ask before removing existing file
-f Forced remove existing file
-s Make similar, copy some attributes
-m Merge trees, disable the into-a-directory trick
-r Copy directory trees with link structure, etc. intact
-R Copy directory trees and treat special files as ordinary
-v Display what cp is doing
-x Do not cross device boundaries
EXAMPLES
cp oldfile newfile # Copy oldfile to newfile
cp -R dir1 dir2 # Copy a directory tree
DESCRIPTION
Cp copies one file to another, or copies one or more files to a directory. Special files are normally opened and read, unless -r is used.
-r also copies the link structure, something -R doesn't care about. The -s option differs from -p that it only copies the times if the
target file already exists. A normal copy only copies the mode of the file, with the file creation mask applied. Set-uid bits are cleared
if the owner cannot be set. (The -s flag does not patronize you by clearing bits. Alas -s and -r are nonstandard.)
Cpdir is a convenient synonym for cp -psmr to make a precise copy of a directory tree.
SEE ALSO cat(1), mkdir(1), rmdir(1), ln(1), rm(1).
CP(1)