I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
Result expected is : Pattern1 ... (7 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
tried using awk but double quotes not preserving for every field. any help to solve this is much... (5 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
snowdrop
SNOWDROP(1) General Commands Manual SNOWDROP(1)NAME
sd-eng, sd-engf, sd-c - text watermarking and watermark recovery
SYNOPSIS
sd-eng [-6] -i origfile newfile "Recipient" ["Comment"]
sd-eng [-6] -e origfile newfile
sd-eng [-6] -l
DESCRIPTION
snowdrop is a stenographic text watermarking and watermark recovery system. It is composed of three programs:
sd-eng Watermark normal English text.
sd-engf
Watermark fine quality English text, yeilding higher quality output but encoding less information.
sd-c Watermark C code.
The three programs operate similarly, with the same parameters and usage. The watermark is encoded in using a number of techniques, such
as whitespace reformatting, typo insertation, word substitutions, punctuation changes, and for C code, logic reordering, variable name man-
gling, etc.
The watermark is a md5sum, which is retreivable from as little as 5 or 10 lines of the watermarked document. Even large changes to a medium
sized document should not obscure the watermark, as it is stored redundently in multiple independent channels.
The three usage modes are adding a watermark, checking for the presense of a watermark, and listing the contents of your database of water-
marks. Note that to later check a watermark, you must retain a copy of the original, un-watermarked file.
OPTIONS -i Inject a watermark into a file. You must pass it the original file, the filename to output the watwrmarked version to, information
about who you intend the watermarked file for, and an optional comment.
-e Extract a watermark from a file. Needs the original file and the new file that you suspect bears the watermark.
-l Lists the contents of the watermark database. Each of the three programs will have a different list.
-6 Enable 64 bit watermarking. The default is a weak 32 bit watermark.
ENVIRONMENT
SD_SYNONYMS
This variable can be used to point snowdrop at a customized synonyms file.
FILES
~/.snowdrop/database
Database of watermarked files.
SEE ALSO
/usr/share/snowdrop/README
Explain snowdrop in more depth, its limitations, and how to write additional watermarking modules for other tpyes of files.
AUTHOR
Michal Zalewski <lcamtuf@coredump.cx>
SNOWDROP(1)