I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
Result expected is : Pattern1 ... (7 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
tried using awk but double quotes not preserving for every field. any help to solve this is much... (5 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT SUNOS
diffmk
diffmk(1) User Commands diffmk(1)NAME
diffmk - mark differences between versions of a troff input file
SYNOPSIS
diffmk oldfile newfile markedfile
DESCRIPTION
diffmk compares two versions of a file and creates a third version that includes "change mark" (.mc) commands for nroff(1) and troff(1).
oldfile and newfile are the old and new versions of the file. diffmk generates markedfile, which, contains the text from newfile with
troff(1) "change mark" requests (.mc) inserted where newfile differs from oldfile. When markedfile is formatted, changed or inserted text
is shown by | at the right margin of each line. The position of deleted text is shown by a single *.
USAGE
See largefile(5) for the description of the behavior of diffmk when encountering files greater than or equal to 2 Gbyte ( 2**31 bytes).
EXAMPLES
Example 1: An example of the diffmk command.
diffmk can also be used in conjunction with the proper troff requests to produce program listings with marked changes. In the following
command line:
example% diffmk old.c new.c marked.c ; nroff reqs marked.c | pr
the file reqs contains the following troff requests:
.pl 1
.ll 77
.nf
.eo
.nh
which eliminate page breaks, adjust the line length, set no-fill mode, ignore escape characters, and turn off hyphenation, respectively.
If the characters | and * are inappropriate, you might run markedfile through sed(1) to globally change them.
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+-----------------------------+-----------------------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+-----------------------------+-----------------------------+
|Availability |SUNWdoc |
+-----------------------------+-----------------------------+
SEE ALSO diff(1), nroff(1), sed(1), troff(1), attributes(5), largefile(5)BUGS
Aesthetic considerations may dictate manual adjustment of some output. File differences involving only formatting requests may produce
undesirable output, that is, replacing .sp by .sp 2 will produce a "change mark" on the preceding or following line of output.
SunOS 5.10 14 Sep 1992 diffmk(1)