I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hello,
I have this sentence :Pattern1 Pattern2 Pattern3 Pattern4-which-contains-HELLO-string-and-other-stuff-and-second-HELLO-and-third-HELLO
I want to delete everything between the 3rd tab (\t) and the FIRST pattern "HELLO" of the line.
Result expected is : Pattern1 ... (7 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
input
"A","B","C,D","E","F"
"S","T","U,V","W","X"
"AA","BB","CC,DD","EEEE","FFF"
required output:
"A","B","C,D","C,D","F"
"S", T","U,V","U,V","X"
"AA","BB","CC,DD","CC,DD","FFF"
tried using awk but double quotes not preserving for every field. any help to solve this is much... (5 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT POSIX
aha
aha(1) Ansi HTML Adapter aha(1)NAME
aha - Ansi HTML Adapter
SYNOPSIS
aha [options] [-f datei]
DESCRIPTION
aha takes SGR-colored Input and prints W3C conform HTML-Code.
aha reads the Input from a file or stdin and writes HTML-Code to stdout.
OPTIONS --help , -h , -?
A help like this
--black , -b
Black Background and white "standard color"
--pink , -p
Pink Background
--iso X , -i X
Uses ISO 8859-X instead of utf-8. X must be 1..16
--title X , -t X
Gives the html output the title
--line-fix , -l
Uses a fix for inputs using control sequences to change the cursor position like htop. It's a hot fix, it may not work with any pro-
gram like htop. (See EXAMPLE)
EXAMPLE
aha --help | aha --black --title "the awesome aha help"> aha-help.htm
Creates an HTML file with the help of aha with black background
colordiff oldfile.c newfile.c | aha > colordiff.htm
Creates an HTML file with a colorful diff-output of two files "oldfile.c" and "newfile.c" with white background
ls --color=always | aha --pink > ls.htm
Creates an HTML file with a colorful ls-output with pink background.
echo a | htop | aha --black --line-fix > htop.htm
Creates an HTML file with the output of htop. You have to use --line-fix due the other new-line-commands htop uses.
AUTHOR
Copyleft Alexander Matthes aka Ziz 2011
zizsdl@googlemail.com
SEE ALSO
http://ziz.delphigl.com/tool_aha.php
August 31, 2011 aha(1)