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Top Forums Shell Programming and Scripting performance issue using gzcat, awk and sort Post 302240150 by otheus on Thursday 25th of September 2008 05:38:44 AM
Old 09-25-2008
Quote:
Originally Posted by naoseionome
hi,
I'm doing some changes already.
I'm running the test now with printf and trying to figure the amount of memory for sort (1 or 2 or 3 Gb :P)
Some architectures/OS' allow only 2GB of memory per process. Keep that in mind.

Also, if your system starts swapping, you'll lose the memory advantage.

Quote:
I wanted to say that hard disk is working in the maximum but there is memory and processor available! I will start using a bit of the available memory for sort.
You can also sort within awk. Just load in the values into a hashed array and foreach() the values to get them out. It uses more memory, but less CPU time.
In that case, using an external sort would be better.

Quote:
I planning on doing gunzip to the files in the biggining. This way i can send all the files into the same script and i just need to do an if for each file, like: IF FILENAME== /*line*/ "line code". this way i can send the result to sort instead of writting the "final" file.
Sounds like a good plan.
 

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JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If one of the file names is the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Input fields are normally separated spaces or tabs; output fields by space. In this case, multiple separators count as one, and leading separators are discarded. The following options are recognized, with POSIX syntax. -a n In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -v n Like -a, omitting output for paired lines. -e s Replace empty output fields by string s. -1 m -2 m Join on the mth field of file1 or file2. -jn m Archaic equivalent for -n m. -ofields Each output line comprises the designated fields. The comma-separated field designators are either 0, meaning the join field, or have the form n.m, where n is a file number and m is a field number. Archaic usage allows separate arguments for field designators. -tc Use character c as the only separator (tab character) on input and output. Every appearance of c in a line is significant. EXAMPLES
sort /adm/users | join -t: -a 1 -e "" - bdays Add birthdays to password information, leaving unknown birthdays empty. The layout of is given in users(6); bdays contains sorted lines like tr : ' ' </adm/users | sort -k 3 3 >temp join -1 3 -2 3 -o 1.1,2.1 temp temp | awk '$1 < $2' Print all pairs of users with identical userids. SOURCE
/sys/src/cmd/join.c SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b -ky,y; with -t, the sequence is that of sort -tx -ky,y. One of the files must be randomly accessible. JOIN(1)
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