09-04-2008
running a looping script for all files in directory
I have three different linux command scripts that I run for 20+ files in one directory.
it goes like this
FIRST SCRIPT:
grep 'something' -w file > newfile1
.
.
.
grep 'something -w file > newfile20
then I take all these 'newfileN' and run this:
awk 'BEGIN { format="%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n" } { printf(format,$1,$15,$4,$4,$4,$4,$2,$3,$4,$4)}' newfile1 > new.newfile1
.
.
.
awk 'BEGIN { format="%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n" } { printf(format,$1,$15,$4,$4,$4,$4,$2,$3,$4,$4)}' newfile20 > new.newfile20
then finally I take these 'new.newfileN' and do this:
sed -e 's/[+-]/U0/2' -e 's/[+-]/0/2' -e 's/[+-]/0/2' -e 's/[+-]/0/2' -e 's/+/F/1' -e 's/-/R/2' -e 's/[+-]/../2' -e 's/chr//1' new.newfile1 > new.new.newfile1
.
.
.
sed -e 's/[+-]/U0/2' -e 's/[+-]/0/2' -e 's/[+-]/0/2' -e 's/[+-]/0/2' -e 's/+/F/1' -e 's/-/R/2' -e 's/[+-]/../2' -e 's/chr//1' new.newfile20 > new.new.newfile20
So, is there a way I can make this all into one script so instead of copying and pasting each scripted line 20+ times.
thanks
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IGAWK(1) Utility Commands IGAWK(1)
NAME
igawk - gawk with include files
SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ...
igawk [ all gawk options ] [ -- ] program-text file ...
DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1).
AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like
@include getopt.awk
in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path.
OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports.
EXAMPLES
cat << EOF > test.awk
@include getopt.awk
BEGIN {
while (getopt(ARGC, ARGV, "am:q") != -1)
...
}
EOF
igawk -f test.awk
SEE ALSO
gawk(1)
Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995.
AUTHOR
Arnold Robbins (arnold@skeeve.com).
Free Software Foundation Nov 3 1999 IGAWK(1)