Sponsored Content
Top Forums Shell Programming and Scripting Sampling and Binning- Engineering problem Post 302232496 by era on Thursday 4th of September 2008 03:10:20 PM
Old 09-04-2008
I'm not very familiar with Cygwin, but if you store the script in sample.pl you would simply run it with

Code:
A:\> sort -t : -n Input.txt | perl sample.pl >Output.txt

where A:\> is my possibly uninformed guess about what the Cygwin prompt looks like. (Actually I guess it's more like you@wintendo$ really.)
 

6 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

trimming and binning rows

I could not find this on the search.. I want to know how to trim a row so lets say I have a file that looks like this: bob 88888888888888 and I want to trim column 2 (lets say 4 off the front and end) bob 888888 Also, how would I bin column 2 Lets so I want to add and average... (1 Reply)
Discussion started by: phil_heath
1 Replies

2. Shell Programming and Scripting

data sampling

I have a requirement where I have multiple flat file sources. I need to create sample data from each source. Example: Source 1 has 10 flat files-- member, transaction,item,email,....etc Now if I get any 10 records (say first 10 records) from the member flat file, I need to find those matching... (2 Replies)
Discussion started by: arrivederci
2 Replies

3. Shell Programming and Scripting

Binning rows while skipping the first column

Hi I have a file that I want to bin. I am using this code: awk -F'\t' -v r=40 '{for(i=r;i<=NF;i+=r){for(j=0;j<r;j++){sum+=$(i-j)}printf "%s ", sum/r;sum=0}; printf "\n"}' file1 > file2 So basically what this code does is that it will averaging every 40 columns (creating bins of 40). But... (2 Replies)
Discussion started by: phil_heath
2 Replies

4. Shell Programming and Scripting

Sampling pcap file

Hi, I have a standard pcap file created using tcpdump. The file looks like 06:49:36.487629 IP 202.1.175.252 > 71.126.222.64: ICMP echo request, id 52765, seq 1280, length 40 06:49:36.489552 IP 192.120.148.227 > 71.126.222.64: ICMP echo request, id 512, seq 1280, length 40 06:49:36.491812 IP... (8 Replies)
Discussion started by: sajal.bhatia
8 Replies

5. Shell Programming and Scripting

problem in binning the data

hi i have some data like this input: 1 apples oranges 234 2 oranges apples 2345 3 grapes bananas 1000000 4 melons banans 10000000 5 bananas apples 5000000 6 mangoes banans 2000000 7 apples bananas 1999999 i want to put all those which are coming between 1 and 999999 in to one bin... (8 Replies)
Discussion started by: anurupa777
8 Replies

6. Shell Programming and Scripting

Gnuplot 3d binning

Hello I have a text file with tens of thousands of rows The format is x y where both x and y can be anything between -100 and +100. What I would like to do is have a 3d gnuplot where there are 10,000 squared or bins and each bin will count how many rows have a value that would be... (1 Reply)
Discussion started by: garethsays
1 Replies
Bio::Event::EventGeneratorI(3pm)			User Contributed Perl Documentation			  Bio::Event::EventGeneratorI(3pm)

NAME
Bio::Event::EventGeneratorI - This interface describes the basic event generator class. SYNOPSIS
# Do not use this object directly # This object has the basic methods for describing an event generator DESCRIPTION
This object describes the basic event generator system. It basically allows one to attach one or many event handlers. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ attach_EventHandler Title : attach_EventHandler Usage : $parser->attatch_EventHandler($handler) Function: Adds an event handler to listen for events Returns : none Args : Bio::Event::EventHandlerI perl v5.14.2 2012-03-02 Bio::Event::EventGeneratorI(3pm)
All times are GMT -4. The time now is 09:34 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy