hey.....
i do have text where the contents are like as follows,
FILE_TYPE_NUM_01=FILE_TYPE=01|FILE_DESC=Periodic|FILE_SCHDL_TYPE=Daily|FILE_SCHDL=|FILE_SCHDL_TIME=9:00am|RESULTS=B
FILE_TYPE_NUM_02=FILE_TYPE=02|FILE_DESC=NCTO|FILE_SCHDL_TYPE=Daily|FILE_SCHDL=|FILE_SCHDL_TIME=9:00am|RESULTS=M... (2 Replies)
Hi,
I have an array with 3 words in it and i have to match all the array contents and display the exact matched sentence i.e all 3 words should match with the sentence.
Here are sentences.
$arr1="Our data suggests that epithelial shape and growth control are unequally affected depending... (5 Replies)
Hi
By using select clause I'm trying to pull out the rows to a variable.
If the variable has 0 row(s) selected then i'm printing some text message
else printing some other text message
if($xyz =~ m/0 row/)
{
print "0 rows ";
}
else
{
print " There are rows";
}
By my problem... (4 Replies)
I am trying to match a pattern exactly in a shell script. I have tried two methods
awk '/\<mpath${CURR_MP}\>/{print $1 $2}' multipath
perl -ne '/\bmpath${CURR_MP}\b/ and print' /var/tmp/multipath
Both these methods require that I use the escape character. I am guessing that is why... (8 Replies)
Hi,
I have a file like follows
.
.
.
White.Jack.is.going.home
Black.Jack.is.going.home
Red.Jack.is.going.home
Jack.is.going.home
.
.
.
when I make:
cat <file> | grep -w "Jack.is.going.home"
it gives:
White.Jack.is.going.home
Black.Jack.is.going.home
Red.Jack.is.going.home... (4 Replies)
Hi friends,
i am using the following grep command for exact word match:
>echo "sachin#tendulkar" | grep -iw "sachin"
output: sachin#tendulkar
as we can see in the above example that its throwinng the exact match(which is not the case as the keyword is sachin and string is... (6 Replies)
Dear all, could you help me with following question. There are two datasets (below). I need to find match between BP values from data1 and data2, and add corresponding CM value from data2 into data1. if there is not exact match, the corresponding CM value should be calculated using interpolation.... (20 Replies)
Hi All,
I am breaking my head in trying to get a command that will exactly match my given string. I have searched net and found few of the options -
grep -F $string file
grep -x $string file
grep "^${string}$" file
awk '/"${string}"/ {print $0}' file
strangely nothing seems to... (3 Replies)
Hello!
I have 2 files named tacs.tmp and tacDB.txt
tacs.tmp looks like this
0
10235647
102700
106800
107200
1105700
tacDB.txt looks like this
100100,Mitsubishi,G410,Handheld,,0,0,0
100200,Siemens,A53,Handheld,,0,0,0
100300,Sony Ericsson,TBD (AAB-1880030-BV),Handheld,,0,0,0... (2 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
tmscore
TMSCORE(1) General Commands Manual TMSCORE(1)NAME
TM-score - an algorithm to calculate the similarity of topologies of two protein structures
VERSION
This documentation refers to TM-score version released on 2011/01/30
SYNOPSIS
1. Run TM-score to compare 'model' and 'native':
TMscore model native
2. Run TM-score with an assigned d0, e.g. 5 Angstroms:
TMscore model native -d 5
3. Run TM-score with superposition output, e.g. 'TM.sup', and view in Rasmol:
TMscore model native -o TM.sup
rasmol -script TM.sup
DESCRIPTION
This program is to compare two protein structures and identify the best superposition that has the highest TM-score. Input structures must
be in the PDB format. By default, TM-score is normalized by the second protein. Users can obtain a brief instruction by simply running the
program without arguments.
OPTIONS -o filename.sup Outputs the superposition to the specified file,
suitable for use in rasmol.
-d value Sets d0 to the specified number of angstroms.
SEE ALSO
TMalign, rasmol
When using this proram and for more detailed information, please refer to the publication in NucleicAcidsRes. (2005) Volume 33 page
2303ff. by Zhang and Skolnick.
AUTHOR
For comments/suggestions,please contact email: zhng@umich.edu.
This manpage was compiled by Tim Booth (tbooth@ceh.ac.uk)
. 2011-02-03 TMSCORE(1)