hey.....
i do have text where the contents are like as follows,
FILE_TYPE_NUM_01=FILE_TYPE=01|FILE_DESC=Periodic|FILE_SCHDL_TYPE=Daily|FILE_SCHDL=|FILE_SCHDL_TIME=9:00am|RESULTS=B
FILE_TYPE_NUM_02=FILE_TYPE=02|FILE_DESC=NCTO|FILE_SCHDL_TYPE=Daily|FILE_SCHDL=|FILE_SCHDL_TIME=9:00am|RESULTS=M... (2 Replies)
Hi,
I have an array with 3 words in it and i have to match all the array contents and display the exact matched sentence i.e all 3 words should match with the sentence.
Here are sentences.
$arr1="Our data suggests that epithelial shape and growth control are unequally affected depending... (5 Replies)
Hi
By using select clause I'm trying to pull out the rows to a variable.
If the variable has 0 row(s) selected then i'm printing some text message
else printing some other text message
if($xyz =~ m/0 row/)
{
print "0 rows ";
}
else
{
print " There are rows";
}
By my problem... (4 Replies)
I am trying to match a pattern exactly in a shell script. I have tried two methods
awk '/\<mpath${CURR_MP}\>/{print $1 $2}' multipath
perl -ne '/\bmpath${CURR_MP}\b/ and print' /var/tmp/multipath
Both these methods require that I use the escape character. I am guessing that is why... (8 Replies)
Hi,
I have a file like follows
.
.
.
White.Jack.is.going.home
Black.Jack.is.going.home
Red.Jack.is.going.home
Jack.is.going.home
.
.
.
when I make:
cat <file> | grep -w "Jack.is.going.home"
it gives:
White.Jack.is.going.home
Black.Jack.is.going.home
Red.Jack.is.going.home... (4 Replies)
Hi friends,
i am using the following grep command for exact word match:
>echo "sachin#tendulkar" | grep -iw "sachin"
output: sachin#tendulkar
as we can see in the above example that its throwinng the exact match(which is not the case as the keyword is sachin and string is... (6 Replies)
Dear all, could you help me with following question. There are two datasets (below). I need to find match between BP values from data1 and data2, and add corresponding CM value from data2 into data1. if there is not exact match, the corresponding CM value should be calculated using interpolation.... (20 Replies)
Hi All,
I am breaking my head in trying to get a command that will exactly match my given string. I have searched net and found few of the options -
grep -F $string file
grep -x $string file
grep "^${string}$" file
awk '/"${string}"/ {print $0}' file
strangely nothing seems to... (3 Replies)
Hello!
I have 2 files named tacs.tmp and tacDB.txt
tacs.tmp looks like this
0
10235647
102700
106800
107200
1105700
tacDB.txt looks like this
100100,Mitsubishi,G410,Handheld,,0,0,0
100200,Siemens,A53,Handheld,,0,0,0
100300,Sony Ericsson,TBD (AAB-1880030-BV),Handheld,,0,0,0... (2 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
swiss::de
SWISS::DE(3pm) User Contributed Perl Documentation SWISS::DE(3pm)Name
SWISS::DE.pm
Description
Each DE object represents one protein name. The container object for all names of an entry is SWISS::DEs
Inherits from
SWISS::BaseClass
Attributes
"text"
The raw text of the protein name. Note: as SwissKnife works with both new and old DE line formats, for backward rcompatibility, with
both formats everything is parsed and stored the same way as it was with the old format. Therefore the raw text for a name of type 'EC'
e.g. 6.3.5.5 will be "EC 6.3.5.5" (instead of "6.3.5.5"). Other strings only present in old DE line text format ('precursor' flag and
'Allergen', 'antigen' strings) are also added in the stored raw text. The safe method to get the DE text is "toText" (with both the
new and old DE line format), which for "EC=6.3.5.5" (new DE line format), will return "6.3.5.5" (DE object of 'EC' type). For "(EC
6.3.5.5)" (old DE line format), will return "EC 6.3.5.5"
"category"
The category of the protein name: 'RecName', 'AltName', 'SubName' (TrEMBL only)
DE RecName: Full=CAD protein;
DE Short=CAD;
Here both names (DE objects), are of category 'RecName'
Category can be set/modified using "category(string)"
Note: with the old DE line format, this field is undef
"type"
The type of the protein name: 'Full', 'Short', 'EC' 'Allergen', 'CD_antigen', 'Biotech','INN'
DE RecName: Full=CAD protein;
DE Short=CAD;
Here the first name (DE object), is of type 'Full', the second one
is of type 'Short'
Type can be set/modified using "type(string)"
Note: with the old DE line format, this field is undef
Standard methods
new
fromText
toText ($addParen)
addParen : (meaningful only with old DE line format) if set to true,
the name will be surrounded by parentheses, but not the evidence
tags, e.g. : '(UMP SYNTHASE){E1}'.
Evidence Tags
Each protein name (DE object) can have independent evidence tags.
DE SubName: Full=Histone H3{EI1};
DE EC=3.4.21.9{EC3};
DE AltName: Full=Enterokinase{EC5};
The following methods have their prototype defined in SWISS::BaseClass instead of the direct parent of SWISS::DEs, SWISS::ListBase :
addEvidenceTag
deleteEvidenceTags
getEvidenceTags
getEvidenceTagsString
hasEvidenceTag
setEvidenceTags
example :
$evidenceTag = $entry->Stars->EV->addEvidence('P', 'DEfix', '-', 'v1.3');
$entry->DEs->head->addEvidenceTag($evidenceTag);
The easiest way to read the evidence tags of a protein name is to use c<getEvidenceTagsString> that will return the evidence tags as a
string with the enclosing {} brackets. If there are no evidence tags, will return an empty string.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 165:
=back doesn't take any parameters, but you said =back =head1 Methods
perl v5.10.1 2008-07-17 SWISS::DE(3pm)