Hi, I have two input files.
File1:
ID Name Place
1-234~name1~Newyork
1-34~name2~Boston
1-2345~name3~Hungary
File1 is a variable length file where each column is seperated by delimitter "~".
File2:
ID Country
1-34<<11 SPACES>>USA<<7 spaces>>
1-234<<10 SPACES>>UK<<8... (5 Replies)
Col1 Col2 Col3 Col4
12 Completed 08 0830
12 In Progress 09 0829
11 For F U 07 0828
Considering the file above, how could i replace the third column the most efficient way? The actual file size is almost 1G. I am... (10 Replies)
Dear friends,
Below is my program and current output. I wish to have 3 or 4 column output in order to accomodate in single page. i do have subsequent command to process after user enter the number.
Program
COUNT=1
for MYDIR in `ls /`
do
VOBS=${MYDIR}
echo "${COUNT}. ${MYDIR}"
... (4 Replies)
Hi,
How to output the duplicate record to another file. We say the record is duplicate based on a column whose position is from 2 and its length is 11 characters.
The file is a fixed width file.
ex of Record:
DTYU12333567opert tjhi kkklTRG9012
The data in bold is the key on which... (1 Reply)
Hi,
I have a fixed width text file without any header row. One of the columns contains a date in YYYYMMDD format.
If the original file contains 3 dates, I want my shell script to split the file into 3 small files with data for each date.
I am a newbie and need help doing this. (14 Replies)
I have a fixed with file with header & trailer length having the same length of the detail record file.
The details record length of this file is 24, for Header and Trailer the records will be padded with spaces to match the record length of the file
Currently I am adding 3 spaces in header... (14 Replies)
hi,
i have a fixed width file with multiple columns and need to print data using awk command.
i use: awk -F "|" '($5 == BH) {print $1,$2,$3}' <non_AIM target>.txt for a delimiter file.
but now i have a fixed width file like below:
7518 8269511BH 20141224951050N8262
11148 8269511BH... (5 Replies)
Hi All,
I am trying to select the rows in a fixed width file based on values in the columns.
I want to select only the rows if column position 3-4 has the value AB
I am using cut command to get the column values. Is it possible to check if cut -c3-4 = AB is true then select only that... (2 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
go-filter-subset
GO-FILTER-SUBSET(1p) User Contributed Perl Documentation GO-FILTER-SUBSET(1p)NAME
go-filter-subset.pl - extracts a subgraph from an ontology file
SYNOPSIS
go-filter-subset.pl -id GO:0003767 go.obo
go-filter-subset.pl -id GO:0003767 -to png go.obo | xv -
go-filter-subset.pl -filter_code 'sub{shift->name =~ /transcr/}' go.obo
DESCRIPTION
Exports a subset of an ontology from a file. The subset can be based on a specified set of IDs, a preset "subset" filter in the ontology
file (eg a GO "slim" or subset), or a user-defined filter.
The subset can be exported in any format, including a graphical image
ARGUMENTS -id ID
ID to use as leaf node in subgraph. All ancestors of this ID are included in the exported graph (unless -partial is set)
Multiple IDs can be passed
-id ID1 -id ID2 -id ID3 ....etc
-subset SUBSET_ID
Extracts a named subset from the ontology file. (only works with obo format files). For example, a specific GO slim
ONLY terms belonging to the subset are exported - the -partial option is automatically set
-namespace NAMESPACE
only terms in this namespace
-filter_code SUBROUTINE
advanced option
A subroutine with which the GO::Model::Term object is tested for inclusion in the subgraph (all ancestors are automatically included)
You should have an understanding of the go-perl object model before using this option
Example:
go-filter-subset -filter_code 'sub {shift->namespace eq 'molecular_function'}' go.obo
(the same things can be achieved with the -namespace option)
-partial
If this is set, then only terms that match the user query are included. Parentage is set to the next recursive parent node in the
filter
For example, with the -subset option: if X and Y belong to the subset, and Z does not, and X is_a Z is_a Y, then the exported graph
withh have X is_a Y
-use_cache
If this switch is specified, then caching mode is turned on.
With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse.
This file will have the same filename as the original file, except it will have the ".cache" suffix.
The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is
more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
DOCUMENTATION
<http://www.godatabase.org/dev>
perl v5.14.2 2010-05-12 GO-FILTER-SUBSET(1p)