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Full Discussion: comm not working
Top Forums Shell Programming and Scripting comm not working Post 302192163 by drl on Tuesday 6th of May 2008 07:27:55 AM
Old 05-06-2008
Hi.

The combination of bash and comm on Solaris 10 seems to work:
Code:
#!/usr/bin/env bash

# @(#) s1       Demonstrate results from comm.

#  ____
# /
# |   Infrastructure BEGIN

echo
set -o nounset

debug=":"
debug="echo"

## The shebang using "env" line is designed for portability. For
#  higher security, use:
#
#  #!/bin/sh -

## Use local command version for the commands in this demonstration.

set +o nounset
echo "(Versions displayed with local utility \"version\")"
version >/dev/null 2>&1 && version =o $(_eat $0 $1) comm
set -o nounset

echo

FILE1=data1
echo " Input file $FILE1:"
cat $FILE1

echo
FILE2=data2
echo " Input file $FILE2:"
cat $FILE2

# |   Infrastructure END
# \
#  ---

echo
echo " Results from processing:"
comm -23 $FILE1 $FILE2

exit 0

Producing
Code:
$ ./s1

(Versions displayed with local utility "version")
SunOS 5.10
GNU bash 3.00.16
comm - no version provided for /usr/bin/comm.

 Input file data1:
CSCeb69473
CSCsg70355
CSCsj78917
CSCsj85065
CSCsl48743
CSCsl72823
CSCsl77748

 Input file data2:
CSCsg39295
CSCsj78917
CSCsj85065
CSCsl72823
CSCsl77748

 Results from processing:
CSCeb69473
CSCsg70355
CSCsl48743

The same results were obtained on Linux 2.6.11 (Debian).

I would next look at the data so see if there are extra non-printing characters ... cheers, drl
 

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JOIN(1) 							   User Commands							   JOIN(1)

NAME
join - join lines of two files on a common field SYNOPSIS
join [OPTION]... FILE1 FILE2 DESCRIPTION
For each pair of input lines with identical join fields, write a line to standard output. The default join field is the first, delimited by whitespace. When FILE1 or FILE2 (not both) is -, read standard input. -a FILENUM print unpairable lines coming from file FILENUM, where FILENUM is 1 or 2, corresponding to FILE1 or FILE2 -e EMPTY replace missing input fields with EMPTY -i, --ignore-case ignore differences in case when comparing fields -j FIELD equivalent to `-1 FIELD -2 FIELD' -o FORMAT obey FORMAT while constructing output line -t CHAR use CHAR as input and output field separator -v FILENUM like -a FILENUM, but suppress joined output lines -1 FIELD join on this FIELD of file 1 -2 FIELD join on this FIELD of file 2 --check-order check that the input is correctly sorted, even if all input lines are pairable --nocheck-order do not check that the input is correctly sorted --header treat the first line in each file as field headers, print them without trying to pair them --help display this help and exit --version output version information and exit Unless -t CHAR is given, leading blanks separate fields and are ignored, else fields are separated by CHAR. Any FIELD is a field number counted from 1. FORMAT is one or more comma or blank separated specifications, each being `FILENUM.FIELD' or `0'. Default FORMAT outputs the join field, the remaining fields from FILE1, the remaining fields from FILE2, all separated by CHAR. Important: FILE1 and FILE2 must be sorted on the join fields. E.g., use ` sort -k 1b,1 ' if `join' has no options, or use ` join -t '' ' if `sort' has no options. Note, comparisons honor the rules specified by `LC_COLLATE'. If the input is not sorted and some lines cannot be joined, a warning message will be given. AUTHOR
Written by Mike Haertel. REPORTING BUGS
Report join bugs to bug-coreutils@gnu.org GNU coreutils home page: <http://www.gnu.org/software/coreutils/> General help using GNU software: <http://www.gnu.org/gethelp/> Report join translation bugs to <http://translationproject.org/team/> COPYRIGHT
Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. SEE ALSO
comm(1), uniq(1) The full documentation for join is maintained as a Texinfo manual. If the info and join programs are properly installed at your site, the command info coreutils 'join invocation' should give you access to the complete manual. GNU coreutils 8.5 February 2011 JOIN(1)
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