Submitting an at job from the previous job is a time-honored method, even if in this case it sounds like you would be bending the rules a little bit.
You'd run this at 21:00 once, and then it should take care of itself (until management notices ...)
$0 is the name of the currently running script, and echoing it to "at" will schedule it to run again at 21:00, tomorrow if submitted after 21:00 (at least in my version of at).
I do not have the luxery of a server that i can try on, so i had to post my qn here.
Say i have two jobs in the cron table, the jobs are scheduled 2 mins apart. Assuming the first jobs does a lot of operations and takes > 2 mins. Will the second job be executed? Will Unix actually have a queue... (3 Replies)
i need to execute 5 jobs at a time in background and need to get the exit status of all the jobs i wrote small script below , i'm not sure this is right way to do it.any ideas please help.
$cat run_job.ksh
#!/usr/bin/ksh
####################################
typeset -u SCHEMA_NAME=$1
... (1 Reply)
Hi,
I have more that 100 jobs I can run background, if I want only 4 running at ther same time, how can I write a script to control it?
Thanks
peter (0 Replies)
Hello,
I am running GNU bash, version 3.2.39(1)-release (x86_64-pc-linux-gnu). I have a specific question pertaining to waiting on jobs run in sub-shells, based on the max number of parallel processes I want to allow, and then wait... (1 Reply)
Hi
Is it possible to run different cron jobs at the same time? It appears that when I run ones at 15 min granularity that they may prevent ones running later in the day.
Should crons run at same time have impact on one another? (4 Replies)
I've scheduled few jobs using cron. But they are not running .....
What might be the possible reasons ?? Also tell me how to troubleshoot.............
Please help me .......
Thanks in Advance. (2 Replies)
Hi,
I'm running atq for a user and its showing 2 'at' jobs in the queue to start at a later time.
> atq
Is there any way i can find out the creation date/time of these jobs?
and ideally what job created them and what script(s) they are going to run?
All i can see is the job number and... (3 Replies)
I have multiple jobs and each job dependent on other job.
Each Job generates a log and If job completed successfully log file end's with JOB ENDED SUCCESSFULLY message and if it failed then it will end with JOB ENDED with FAILURE.
I need an help how to start.
Attaching the JOB dependency... (3 Replies)
on linux redhat, ubuntu systems, what reason would there be for a cron job not running at exactly the time it was scheduled to run, everytime?
meaning, if i put something in cron to run every 120 seconds (2 minutes), why is it that some times, i find that cron would sometimes run the job a few... (1 Reply)
Discussion started by: SkySmart
1 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)