Hi All,
Below is the sample data of my files:
O|A|571000689|D|S|PNH|S|SI
sadm|ibscml1x|
I|A|571000689|P|S|PNH|S|SI
sadm|ibscml1x|
O|A|571000689|V|S|PNH|S|SI
sadm|ibscml1x|
S|C|CAM|D|S|PNH|R|ZOA|2004
bscml1x| ... (3 Replies)
ps -eaf | grep “oracleTRLV (LOCAL=NO)” | while read ora_proc
do
echo $ora_proc
done
I would like to modify the above shell so that if character 13 and 14 equal "12" to do something.
Sorry I'm new to shell:( (14 Replies)
hi ,
i am having a file
Full_ARTMAS_20110510152425.xml in my local directory. i wanted to extract the character at the 35143546 th position at line 1 of this file.Can any body help me how to do it???
regards
Anjali (2 Replies)
Greetings.
I need to extract text between two character positions, e.g: all text between character 4921 and 6534.
The text blocks are FASTA-format sequence of whole chromosomes, so basically a million A, T, G, C, combinations. E.g:
>Chr_1
ACCTGTTCAACTCTCAGGACTCTCAGGTCAACTCTCAG... (3 Replies)
Hi,
I need to extract the first character of second column of my file. If the condition matches, then I need to print the 2nd and 3rd column as my output
I tried below mentioned query but it was not working
awk -F'|' '$2~/^5/' Sgn_group.txt
File Name : Sgn_group.txt
country... (2 Replies)
Dear folks
Hello
I have a data set which one of the column of this data set are string and I want to extract numbers which is between two ":". However, I know the substr command which will do this operation but my problem is the numbers between two ":" have different digits. this will make my... (11 Replies)
Hello,
I have a file of strings a below:-
4358RYFHD9845
28/COC/UYF984
9834URD 98HJDU
I need to extract all the first numeric character of every sting as follows:-
4358
28
9834
thanks to suggest ASAP
Regards,
Jasi
Use code tags, thanks. (7 Replies)
Hi, I have a file consist of 25000 lines and each line has 2 columns 1 column with 6 numeric characters and 2nd one with 45000 numeric characters (not delimited). I want to take every 7th character form the 2nd column, keeping the first column. I made it in several steps but it run for 7 hours to... (7 Replies)
Discussion started by: SANDO
7 Replies
LEARN ABOUT DEBIAN
tfbs::patterngen
TFBS::PatternGen(3pm) User Contributed Perl Documentation TFBS::PatternGen(3pm)NAME
TFBS::PatternGen - a base class for pattern generators
DESCRIPTION
TFBS::PatternGen is a base classs providing methods common to all pattern generating modules. It is meant to be inherited by a concrete
pattern generator, which must have its own constructor.
pattern
Title : pattern
Usage : my $pattern_obj = $patterngen->pattern()
Function: retrieves a pattern object produced by the pattern generator
Returns : a pattern object (currently available pattern generators
return a TFBS::Matrix::PFM object)
Args : none
Warning : If a pattern generator produces more than one pattern,
this method call returns only the first one and prints
a warning on STDERR, In those cases you should use
I<all_patterns> or I<patternSet> methods.
patternSet
Title : patternSet
Usage : my $patternSet = $patterngen->patternSet()
Function: retrieves a pattern set object containing all the patterns
produced by the pattern generator
Returns : a pattern set object (currently available pattern generators
return a TFBS::MatrixSet object)
Args : none
all_patterns
Title : all_patterns
Usage : my @patterns = $patterngen->all_patterns()
Function: retrieves an array of pattern objects
produced by the pattern generator
Returns : an array of pattern set objects (currently available
pattern generators return an array of
TFBS::Matrix::PFM objects)
Args : none
perl v5.14.2 2008-01-24 TFBS::PatternGen(3pm)