if i use "rm - rf <filename>" command it asks about conformation for accessing each folder and for removing every file and giving yes to every message in terminal window is very frustrating.
1: There is an extra space between the dash and rf.
2: I believe you shouldn't been prompted with this command unless you are using a broken rm which force the "-i" option.
3: you should be able to override that with the "yes" command:
I have a file which consists of 1000 entries. Out of 1000 entries i have 500 Duplicate Entires. I want to remove the first Duplicate Entry (i,e entire Line) in the File.
The example of the File is shown below:
8244100010143276|MARISOL CARO||MORALES|HSD768|CARR 430 KM 1.7 ... (1 Reply)
Hi,
I have a file which is having some carriage return in one of the field for which single line is coming in multiple lines.
I want to combine all those multiple lines of that field into one line.
Eg:
Input:
Id, Name, Location, Comments, Dept
2, John, US, I am from US.
I... (5 Replies)
All,
I know that this will remove a file extension from a file name, but reading on the documentation on how it works confuses me.
${filename%.*}Can anyone explain what exactly is going on here? Filename is the pattern and % says to cut anything that starts with .?
Also, can I run this... (4 Replies)
Hello..
I have a text file. I want to remove all the blank spaces(except tab) from the file..
I tried using sed command as shown below
sed 's/ //g' file1
But the problem with the above command is that it also eliminates 'tab' which is between the columns..
For example if the contents... (7 Replies)
I have a file from which I want to eliminate the numerical values..
The contents of the file are as shown below..
1 a1,b,2 1,b,c
2 a2,4,b a,b,2
From the above file I want eliminate only the numberical values(except the line numbers which are at the beginning)..
The file... (12 Replies)
Hi all,
I have a file with extended ASCII codes in the description which needs to be removed.
List of extended ascii codes
"Œ", "œ", "Š", "š", "Ÿ", "ƒ", "-", "-", "‘",
"'", "‚", "“", "”", "„","†", "‡", "•",
"...", "‰", "€", "™"
Sample data:
Test Details-HAVE BEEN PUBLISHED... (1 Reply)
Hi Everyone,
I see some peculier thing happening on my server. I have one zipped file created long back as a normal user and trying to remove it now. When i tried to remove as that particular user, i was not able to do that. So i logged in as a root user and removed that successfully. But it... (8 Replies)
Dear all
From below mention input file I needed op file as show below. I am using below code but not worked.
I/p file
BSCBCH1 EXAL-1-4 WO* SMPS MAINS FAIL
BSCBCH1 EXAL-1-5 WO* SMPS RECTIFIER FAIL
BSCBCH1 EXAL-1-6 WO* SMPS MAJOR ALARM
BSCBCH2 EXAL-1-10 WO* ... (5 Replies)
ENVIROMENT
Linux: RHEL 6.4
Log Path: /usr/iplanet/servers/https-company/logs
Log Format: user.log.03-15-2015
I have log4j log rotation enabled rotating files on a daily basis.
The rotated logs are NOT compressed & are taking up too much space.
I need a script that will run daily that... (1 Reply)
What I need is to remove the text from Location_file.txt from each line matching all entries from Remove_location.txt
Location_file.txt
FlowPrePaid, h3nmg1cm2,Jamaica_MTAImageFileFlowPrePaid,h0nmg1cm1, Flow_BeatTest,FlowRockTest
FlowNewTest,FlowNewTest,h0nmg1cm1
PartiallySubscribed,... (3 Replies)
Discussion started by: ketanraut
3 Replies
LEARN ABOUT DEBIAN
g_protonate
g_protonate(1) GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c g_protonate(1)NAME
g_protonate - protonates structures
VERSION 4.5.4-dev-20110404-bc5695c
SYNOPSIS
g_protonate -s topol.tpr -f traj.xtc -n index.ndx -o protonated.xtc -[no]h -[no]version -nice int -b time -e time -dt time
DESCRIPTION
g_protonate reads (a) conformation(s) and adds all missing hydrogens as defined in gmx2.ff/aminoacids.hdb. If only -s is specified, this
conformation will be protonated, if also -f is specified, the conformation(s) will be read from this file, which can be either a single
conformation or a trajectory.
If a .pdb file is supplied, residue names might not correspond to to the GROMACS naming conventions, in which case these residues will
probably not be properly protonated.
If an index file is specified, please note that the atom numbers should correspond to the protonated state.
FILES -s topol.tpr Input
Structure+mass(db): tpr tpb tpa gro g96 pdb
-f traj.xtc Input, Opt.
Trajectory: xtc trr trj gro g96 pdb cpt
-n index.ndx Input, Opt.
Index file
-o protonated.xtc Output
Trajectory: xtc trr trj gro g96 pdb
OTHER OPTIONS
-[no]hno
Print help info and quit
-[no]versionno
Print version info and quit
-nice int 0
Set the nicelevel
-b time 0
First frame (ps) to read from trajectory
-e time 0
Last frame (ps) to read from trajectory
-dt time 0
Only use frame when t MOD dt = first time (ps)
SEE ALSO gromacs(7)
More information about GROMACS is available at <http://www.gromacs.org/>.
Mon 4 Apr 2011 g_protonate(1)