03-04-2008
summer,
thanks soo much for looking into this. I really appreciate it. I should have been more specific on what I needed. I still think this will help a lot. I was looking for a awk solution, because I was having issues with this part of the script/function. Your solution I believe will help me with this part of the script I am writing. Thanks again soo much.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Greetings All!!
I have a very peculiar problem where I have to parse a big text file and extract useful data out of it with starting and ending block pattern matching.
e.g. I have a input file like this:
sample data
block1
sample data
start
useful data
end
sample data
block2
sample... (5 Replies)
Discussion started by: arminder
5 Replies
2. Shell Programming and Scripting
Hi,
I have file (FILE.tmp) having contents,
FILE.tmp
========
filename=menudata
records=0000000000037
ldbname=pinsys
timestamp=2005/05/14-18:32:33
I want to parse it bring a new file which will look like,
filename records ldbname timestamp... (2 Replies)
Discussion started by: Omkumar
2 Replies
3. Shell Programming and Scripting
Hi all,
I wud like to get ur assistance in retrieving lines containing l1.My excel dataset contains around 8000 lines.I converted it into a text tab delimiter file and got the lines containing l1,My output is a list of lines containing l1 saved in a outfile.Some of d lines from my outfile s... (5 Replies)
Discussion started by: sayee
5 Replies
4. Shell Programming and Scripting
Hi All
I have two files:
file 1
>AB_1
MLKKPIIIGVTGGSGGGKTSVSRAILDSFPNARIAMIQHDSYYKDQSHMSFEERVKTNYDHPLAFDTDFM
IQQLKELLAGRPVDIPIYDYKKHTRSNTTFRQDPQDVIIVEGILVLEDERLRDLMDIKLFVDTDDDIRII
RRIKRDMMERGRSLESIIDQYTSVVKPMYHQFIEPSKRYADIVIPEGVSNVVAIDVINSKIASILGEV
>AB_2... (5 Replies)
Discussion started by: Lucky Ali
5 Replies
5. Shell Programming and Scripting
Hi,
I have a folder that contains many (multiple) files
1.fasta
2.fasta
3.fasta
4.fasta
5.fasta
.
.
100's of files
Each such file have data in the following format
for example:
vi 1.fasta
>AB_1 gi|15835212|ref|NP_296971.1| preprotein translocase subunit SecE... (3 Replies)
Discussion started by: Lucky Ali
3 Replies
6. Shell Programming and Scripting
Hi All,
I need some help to effectively parse out a subset of results from a big results file.
Below is an example of the text file. Each block that I need to parse starts with "Output of GENE for sequence file 100.fasta" (next block starts with another number). I have given the portion of... (8 Replies)
Discussion started by: Lucky Ali
8 Replies
7. Shell Programming and Scripting
Hi,
I have 2 files
format of file 1 is:
a1
b2
a2
c2
d1
f3
format of file 2 is (tab delimited):
a1 1.2 0.5 0.06 0.7 0.9 1 0.023
a3 0.91 0.007 0.12 0.34 0.45 1 0.7
a2 1.05 2.3 0.25 1 0.9 0.3 0.091
b1 1 5.4 0.3 9.2 0.3 0.2 0.1
b2 3 5 7 0.9 1 9 0 1
b3 0.001 1 2.3 4.6 8.9 10 0 1 0... (10 Replies)
Discussion started by: Lucky Ali
10 Replies
8. Shell Programming and Scripting
I have 2 text files where I need to parse data from file 2 using the data from file 1. Below are my sample files
File 1 (tab delimited)
257 350
670 845
725 1025
767 820
...
....
....
file 2 (tab delimited)
220..450 TA AB650 ABCED
520..850 GA AB720 ABCDE
700..1100 TC AB820 ABCDE... (2 Replies)
Discussion started by: Lucky Ali
2 Replies
9. Shell Programming and Scripting
Im really beginner in this case, maybe someone can help me find the answer:
if my input file like this:
void main(int a, int b){
int x; double y;
printf("file");
}
and i want output like this:
int a
int b
int x
double y
A awk script that can parse only data tipe, im confused.
what... (2 Replies)
Discussion started by: radynaraya
2 Replies
10. Shell Programming and Scripting
Hey Guys,
I'm a novice at shell scripts and i need some help parsing file data.
Basically, I want to write a script that retrieves URLs.
Here is what I have so far.
#!/bin/bash
echo "Please enter start date (format: yyyy-mm-dd):\c"
read STARTDATE
echo "Please enter end date... (7 Replies)
Discussion started by: silverdust
7 Replies
IGAWK(1) Utility Commands IGAWK(1)
NAME
igawk - gawk with include files
SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ...
igawk [ all gawk options ] [ -- ] program-text file ...
DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1).
AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like
@include getopt.awk
in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path.
OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports.
EXAMPLES
cat << EOF > test.awk
@include getopt.awk
BEGIN {
while (getopt(ARGC, ARGV, "am:q") != -1)
...
}
EOF
igawk -f test.awk
SEE ALSO
gawk(1)
Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995.
AUTHOR
Arnold Robbins (arnold@skeeve.com).
Free Software Foundation Nov 3 1999 IGAWK(1)