First, thanks for the help in previous posts... couldn't have gotten where I am now without it!
So here is what I have, I use AWK to match $1 and $2 as 1 string in file1 to $1 and $2 as 1 string in file2. Now I'm wondering if I can extend this AWK command to incorporate the following:
If $1... (4 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
file1:
file2:
I need to find matches for any lines in file1 that appear in file2. Desired output is '>' plus the file1 term, followed by the line after the match in file2 (so the title is a little misleading):
This is honestly beyond what I can do without spending the whole night on it, so I'm... (2 Replies)
I have a file containing texts and indexes. I need the text between (and including ) INDEX and number "1" alone in line. I have managed this:
awk '/INDEX/,/1$/{if (!/1$/)print}' file1.txt
It works for all indexes.
And then I have second file with years and indexes per year, one per line... (3 Replies)
I have two files.
File 1 is a two-column index file, e.g.
comp11084_c0_seq6:130-468(-) comp12746_c0_seq3:140-478(+)
comp11084_c0_seq3:201-539(-) comp12746_c0_seq2:191-529(+)
File 2 is a sequence file with headers named with the same terms that populate file 1. ... (1 Reply)
I have a list of IDs in file1 and a list of sequences in file2. I can print sequences from file2, but I'm asking for help in printing the sequences in the same order as the IDs appear in file1.
file1:
EN_comp12952_c0_seq3:367-1668
ES_comp17168_c1_seq6:1-864
EN_comp13395_c3_seq14:231-1088... (5 Replies)
My original files are like this below and I distinguish them from the AP_ID (file1 has 572 and file2 has 544). Also, the header on file1 has “G_” pre-pended. NOTE: these are only snippets of very large files and much of the data is not present here.
Original File 1:
... (36 Replies)
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
This is a question that is related to one I had last August when I was trying to sort/merge two files by millsecond time column (in this case column 6).
The script (below) that helped me last august by RudiC solved the puzzle of sorting/merging two files by time, except it gets lost when the... (0 Replies)
Discussion started by: aachave1
0 Replies
LEARN ABOUT CENTOS
lzcmp
XZDIFF(1) XZ Utils XZDIFF(1)NAME
xzcmp, xzdiff, lzcmp, lzdiff - compare compressed files
SYNOPSIS
xzcmp [cmp_options] file1 [file2]
xzdiff [diff_options] file1 [file2]
lzcmp [cmp_options] file1 [file2]
lzdiff [diff_options] file1 [file2]
DESCRIPTION
xzcmp and xzdiff invoke cmp(1) or diff(1) on files compressed with xz(1), lzma(1), gzip(1), bzip2(1), or lzop(1). All options specified
are passed directly to cmp(1) or diff(1). If only one file is specified, then the files compared are file1 (which must have a suffix of a
supported compression format) and file1 from which the compression format suffix has been stripped. If two files are specified, then they
are uncompressed if necessary and fed to cmp(1) or diff(1). The exit status from cmp(1) or diff(1) is preserved.
The names lzcmp and lzdiff are provided for backward compatibility with LZMA Utils.
SEE ALSO cmp(1), diff(1), xz(1), gzip(1), bzip2(1), lzop(1), zdiff(1)BUGS
Messages from the cmp(1) or diff(1) programs refer to temporary filenames instead of those specified.
Tukaani 2011-03-19 XZDIFF(1)