First, thanks for the help in previous posts... couldn't have gotten where I am now without it!
So here is what I have, I use AWK to match $1 and $2 as 1 string in file1 to $1 and $2 as 1 string in file2. Now I'm wondering if I can extend this AWK command to incorporate the following:
If $1... (4 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
file1:
file2:
I need to find matches for any lines in file1 that appear in file2. Desired output is '>' plus the file1 term, followed by the line after the match in file2 (so the title is a little misleading):
This is honestly beyond what I can do without spending the whole night on it, so I'm... (2 Replies)
I have a file containing texts and indexes. I need the text between (and including ) INDEX and number "1" alone in line. I have managed this:
awk '/INDEX/,/1$/{if (!/1$/)print}' file1.txt
It works for all indexes.
And then I have second file with years and indexes per year, one per line... (3 Replies)
I have two files.
File 1 is a two-column index file, e.g.
comp11084_c0_seq6:130-468(-) comp12746_c0_seq3:140-478(+)
comp11084_c0_seq3:201-539(-) comp12746_c0_seq2:191-529(+)
File 2 is a sequence file with headers named with the same terms that populate file 1. ... (1 Reply)
I have a list of IDs in file1 and a list of sequences in file2. I can print sequences from file2, but I'm asking for help in printing the sequences in the same order as the IDs appear in file1.
file1:
EN_comp12952_c0_seq3:367-1668
ES_comp17168_c1_seq6:1-864
EN_comp13395_c3_seq14:231-1088... (5 Replies)
My original files are like this below and I distinguish them from the AP_ID (file1 has 572 and file2 has 544). Also, the header on file1 has “G_” pre-pended. NOTE: these are only snippets of very large files and much of the data is not present here.
Original File 1:
... (36 Replies)
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
This is a question that is related to one I had last August when I was trying to sort/merge two files by millsecond time column (in this case column 6).
The script (below) that helped me last august by RudiC solved the puzzle of sorting/merging two files by time, except it gets lost when the... (0 Replies)