I have a value
VAL=XXXX_20061001_00 XXXX_20061001_03 XXXX_20061001_00 XXXX_20061002_00 XXXX_20061002_03 XXXX_20061003_00
The VAL has duplicates like XXXX_20061001_00 repeated twice.
How to make the VAL with unique values.
Thanks in advance. (6 Replies)
Ok i have an expect script that logs into an appliance kinda like a Cisco router, runs a command, and I need to get some calculation out of the output of that command. The reason I have to use an expect script is the data I am trying to harvest does not have an SNMP variable assigned to it.
I... (1 Reply)
I am converting a mysql database from myIsam to innodb. After dumping all databases to a file, I am trying to make modification:
sed s/ENGINE=MyISAM/ENGINE=InnoDB/ dump_1 > dump_1_inno
however, when I import the modified dump file to mysql server, I got error:
ERROR 1214 (HY000) at line... (4 Replies)
I've got a script which finds *.txt files in directories and subdirectories after providing the path by the user and then searches in the files for phrase given by the user
How to write script in such way that the paths to the found *.txt files and the phrase given by the user were both... (2 Replies)
I have data that looks like this:
2002 140 40800.0060 GPS 20 C1 25477810.2305
2002 140 41100.0060 GPS 20 C1 25298056.0453
I need to get data after certain pattern.. for example if i search for C1
it should return
25477810.2305
25298056.0453
To achieve this, it should:
... (3 Replies)
Hello,
I am trying to print lines from a text file using this command
gawk '/Filename:/' 11.rtf >> 22.rtf
and it work ok.
but if the phrase has included forward (/) something like that
gawk '/File/name:/' 11.rtf >> 22.rtf
it give error . so is there any manipulation when it... (1 Reply)
Here is my file:
700 7912345678910
61234567891234567891
700 8012345678910
61234567891234567891
I want to pull all lines that begin with '700' only if columns 11-12 are '79'.
My code so far only pulls the '79', not the whole line:
grep ^700 file1 | cut -c 11,12 |... (7 Replies)
I want to burst a report by using the page number value in the report header. Each section starts with *PAGE NO:* 1 Each section might have several pages, but the next section always starts back at 1.
So I want to find the "*PAGE NO:* 1" value and pull all lines that follow until "*PAGE NO:* 1"... (4 Replies)
Discussion started by: Scottie1954
4 Replies
LEARN ABOUT DEBIAN
bio::map::positionwithsequence
Bio::Map::PositionWithSequence(3pm) User Contributed Perl Documentation Bio::Map::PositionWithSequence(3pm)NAME
Bio::Map::PositionWithSequence - A position with a sequence.
SYNOPSIS
use Bio::Map::PositionWithSequence;
my $pos = Bio::Map::PositionWithSequence->new(-map => $map,
-element => $element,
-start => 0,
-seq => 'ATGC');
DESCRIPTION
Have a position with a sequence, eg. define what the binding site sequence of a certain transcription factor binding site is by modelling
it as one of these objects with the -element assigned to a Bio::Map::TranscriptionFactor instance.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Sendu Bala
Email bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Map::PositionWithSequence->new();
Function: Builds a new Bio::Map::PositionWithSequence object
Returns : Bio::Map::PositionWithSequence
Args : -map => Bio::Map::GeneMap object
-element => Bio::Map::Gene object
-relative => Bio::Map::GeneRelative object
-seq => string, length of this string will set the length
of this position's range
* If this position has no range, or if a single value can describe
the range *
-value => scalar : something that describes the single
point position or range of this
Position, most likely an int
* Or if this position has a range, at least two of *
-start => int : value of the start co-ordinate
-end => int : value of the end co-ordinate
-length => int : length of the range
seq
Title : seq
Usage : my $string = $obj->seq();
Function: Get/set the sequence as a string of letters.
Returns : scalar
Args : Optionally on set the new value (a string). An optional second
argument presets the alphabet (otherwise it will be guessed).
perl v5.14.2 2012-03-02 Bio::Map::PositionWithSequence(3pm)