match a phrase Post: 302158287

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Top Forums Shell Programming and Scripting match a phrase Post 302158287 by ghostdog74 on Tuesday 15th of January 2008 01:05:05 AM

01-15-2008

Registered User

what is not doing ? you can at least show your output.
I don't know, here's my simulation of your problem

Code:

$sent1="Transactivation of wound-responsive genes containing the core sequence of the auxin-responsive element by a wound-induced protein kinase-activated transcription factor in tobacco plants.";

$sent2="I branching formation in erythroid differentiation is regulated by transcription factor.";

$query="transcription factor";
print "Original sent1: $sent1\n";;
if($sent1=~/$query/i)
{
    print "matched\n";
    $sent1=~s/($query)/<spanstyle="background-color:#E1FF77">$1<\/span>/i;
    print "<br>sentence1=$sent1<br>";
}

Here's my output.

Code:

# ./test1.pl
Original sent1: Transactivation of wound-responsive genes containing the core sequence of the auxin-responsive element by a wound-induced protein kinase-activated transcription factor in tobacco plants.
matched
<br>sentence1=Transactivation of wound-responsive genes containing the core sequence of the auxin-responsive element by a wound-induced protein kinase-activated <spanstyle="background-color:#E1FF77">transcription factor</span> in tobacco plants.<br>
#

ghostdog74

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LEARN ABOUT DEBIAN

bio::liveseq::translation

Bio::LiveSeq::Translation(3pm)				User Contributed Perl Documentation			    Bio::LiveSeq::Translation(3pm)

NAME

       Bio::LiveSeq::Translation - Translation class for LiveSeq

SYNOPSIS

	 #documentation needed

DESCRIPTION

       This stores information about aminoacids translations of transcripts.  The implementation is that a Translation object is the translation
       of a Transcript object, with different possibilities of manipulation, different coordinate system and eventually its own ranges (protein
       domains).

AUTHOR - Joseph A.L. Insana
       Email:  Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

   new
	 Title	 : new
	 Usage	 : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr);

	 Function: generates a new Bio::LiveSeq::Translation
	 Returns : reference to a new object of class Translation
	 Errorcode -1
	 Args	 : reference to an object of class Transcript

   get_Transcript
	 Title	 : valid
	 Usage	 : $transcript = $obj->get_Transcript()
	 Function: retrieves the reference to the object of class Transcript (if any)
		   attached to a LiveSeq object
	 Returns : object reference
	 Args	 : none

   aa_ranges
	 Title	 : aa_ranges
	 Usage	 : @proteinfeatures = $translation->aa_ranges()
	 Function: to retrieve all the LiveSeq AARange objects attached to a
		   Translation, usually created out of a SwissProt database entry
		   crossreferenced from an EMBL CDS feature.
	 Returns : an array
	 Args	 : none

perl v5.14.2							    2012-03-02					    Bio::LiveSeq::Translation(3pm)