I have a value
VAL=XXXX_20061001_00 XXXX_20061001_03 XXXX_20061001_00 XXXX_20061002_00 XXXX_20061002_03 XXXX_20061003_00
The VAL has duplicates like XXXX_20061001_00 repeated twice.
How to make the VAL with unique values.
Thanks in advance. (6 Replies)
Ok i have an expect script that logs into an appliance kinda like a Cisco router, runs a command, and I need to get some calculation out of the output of that command. The reason I have to use an expect script is the data I am trying to harvest does not have an SNMP variable assigned to it.
I... (1 Reply)
I am converting a mysql database from myIsam to innodb. After dumping all databases to a file, I am trying to make modification:
sed s/ENGINE=MyISAM/ENGINE=InnoDB/ dump_1 > dump_1_inno
however, when I import the modified dump file to mysql server, I got error:
ERROR 1214 (HY000) at line... (4 Replies)
I've got a script which finds *.txt files in directories and subdirectories after providing the path by the user and then searches in the files for phrase given by the user
How to write script in such way that the paths to the found *.txt files and the phrase given by the user were both... (2 Replies)
I have data that looks like this:
2002 140 40800.0060 GPS 20 C1 25477810.2305
2002 140 41100.0060 GPS 20 C1 25298056.0453
I need to get data after certain pattern.. for example if i search for C1
it should return
25477810.2305
25298056.0453
To achieve this, it should:
... (3 Replies)
Hello,
I am trying to print lines from a text file using this command
gawk '/Filename:/' 11.rtf >> 22.rtf
and it work ok.
but if the phrase has included forward (/) something like that
gawk '/File/name:/' 11.rtf >> 22.rtf
it give error . so is there any manipulation when it... (1 Reply)
Here is my file:
700 7912345678910
61234567891234567891
700 8012345678910
61234567891234567891
I want to pull all lines that begin with '700' only if columns 11-12 are '79'.
My code so far only pulls the '79', not the whole line:
grep ^700 file1 | cut -c 11,12 |... (7 Replies)
I want to burst a report by using the page number value in the report header. Each section starts with *PAGE NO:* 1 Each section might have several pages, but the next section always starts back at 1.
So I want to find the "*PAGE NO:* 1" value and pull all lines that follow until "*PAGE NO:* 1"... (4 Replies)
Discussion started by: Scottie1954
4 Replies
LEARN ABOUT DEBIAN
lastal
LASTAL(1) User Commands LASTAL(1)NAME
lastal - genome-scale comparison of biological sequences
SYNOPSIS
lastal [options] lastdb-name fasta-sequence-file(s)
DESCRIPTION
Find local sequence alignments.
Score options (default settings): -r: match score (DNA: 1, protein: blosum62, 0<Q<5: 6) -q: mismatch cost (DNA: 1, protein: blosum62,
0<Q<5: 18) -p: file for residue pair scores -a: gap existence cost (DNA: 7, protein: 11, 0<Q<5: 21) -b: gap extension cost (DNA: 1, pro-
tein: 2, 0<Q<5: 9) -c: unaligned residue pair cost (100000) -F: frameshift cost (off) -x: maximum score drop for gapped alignments
(max[y, a+b*20]) -y: maximum score drop for gapless alignments (t*10) -z: maximum score drop for final gapped alignments (x) -d: minimum
score for gapless alignments (e*3/5) -e: minimum score for gapped alignments (DNA: 40, protein: 100, 0<Q<5: 180)
Cosmetic options (default settings): -h: show all options and their default settings -v: be verbose: write messages about what lastal is
doing -o: output file -f: output format: 0=tabular, 1=maf (1)
Miscellaneous options (default settings): -s: strand: 0=reverse, 1=forward, 2=both (2 for DNA, 1 for protein) -m: maximum multiplicity for
initial matches (10) -l: minimum length for initial matches (1) -n: maximum number of gapless alignments per query position (infinity) -k:
step-size along the query sequence (1) -i: query batch size (1 MiB if Q>0, else 16 MiB if j=0, else 128 MiB) -u: mask lowercase during
extensions: 0=never, 1=gapless,
2=gapless+gapped but not final, 3=always (2 if lastdb -c and Q<5, else 0)
-w: supress repeats inside exact matches, offset by this distance or less (1000) -G: genetic code file -t: 'temperature' for calculating
probabilities (1/lambda) -g: 'gamma' parameter for gamma-centroid and LAMA (1) -j: output type: 0=match counts, 1=gapless, 2=redundant
gapped, 3=gapped,
4=column ambiguity estimates, 5=gamma-centroid, 6=LAMA (3)
-Q: input format: 0=fasta, 1=fastq-sanger, 2=fastq-solexa, 3=fastq-illumina,
4=prb, 5=PSSM (0)
REPORTING BUGS
Report bugs to: last (ATmark) cbrc (dot) jp
LAST home page: http://last.cbrc.jp/
lastal 199 May 2012 LASTAL(1)