If I understand what you're trying to do correctly, here's a quick bash script.
As mentioned by OP, the files are in GB. I think there will be some performance lag. just a guess.
Also seq is not a standard command in some *nix OS. Therefore if you want to use loops that loop over a counter, a while loop can be used instead. eg while [ $num -le $numlines ]
Hello all,
Can anyone help me with this.
There are two files and I have to match the second file records with that of first and if matched, print the output in two fies, one containing the matched records and other containing the rest.
Here is the example.
File1
"111",erter,"00000", ... (4 Replies)
hi
I have 2 files to comapre ,in file a sible column it is numbers,in file b2 numbers and other values with coma separated.
i want compare numbers in file a with file b,and the out put put should be in C with numbers in both file a and b along with other columns of file b.
i used folowing... (7 Replies)
I have two text files which have records of thousand rows. Each row is having around 40 columns. Each column is tab delimited. Each row is delimited by newline character.
My requirement is to find for each row i need to find whether any column is different between the two files. For each row i... (8 Replies)
Hi i have 2 csv files a.csv and b.csv with the same number of columns and a list of values in both of it. Each and every individual value in both the files need to compared and if it matches then print correct in a new csv file otherwise print Incorrect
eg
a.csv
1,12/27/2007,Reward,$10.00... (5 Replies)
now i have a different file zoo.txt with content
123|zoo
234|natan
456|don
and file rick.txt with contents
123|dog|pie|pep
123|tail|see|newt
456|som|sin|sim
234|pay|rat|cat
i want to look for lines in file zoo.txt column1 that has same corresponding lines in column 1 of... (6 Replies)
Hi all,
i have two .csv files. i need to compare those two files and if there is any difference that should be moved into third .csv file.
example,
org.csv and dup.csv
when we compare those two files org.csv and dup.csv. if there is any change in dup.csv. it should be capture in third... (7 Replies)
Hello, I am trying to compare 2 files and get only the new lines as output. Note that new lines can be anywhere in the file and not necessarily at the bottom of the file.
I have made the following progress so far.
/home/aa>cat old.txt
0001 732 A
0002 732 C
0005 732 D... (7 Replies)
Dear All,
I would really appreciate if you can help me to resolve this file comparison
I have two files:
file1:
chr start end ID gene_name
chr1 2020 3030 1 test1
chr1 900 5000 2 test1
chr2 5000 8000 3 test2
chr3 6000 12000 4 test3
chr3 6000 15000 5 test3
file2:... (2 Replies)
HI,
I have two files and contains many Fields with | (pipe) delimitor, wanted to compare both the files and get only unmatched perticular fields. this i wanted to use in shell scriting.
ex:
first.txt
111 |abc| 230| hbc231 |bbb |210 |bbd405 |ghc |555 |cgv
second.txt
111 |abc |230 |hbc231... (1 Reply)
Discussion started by: prawinmca
1 Replies
LEARN ABOUT DEBIAN
gene2xml
GENE2XML(1) NCBI Tools User's Manual GENE2XML(1)NAME
gene2xml - convert NCBI Entrez Gene ASN.1 into XML
SYNOPSIS
gene2xml [-] [-b] [-c] [-i filename] [-l] [-o filename] [-p path] [-r path] [-t N] [-x] [-y] [-z]
DESCRIPTION
gene2xml is a stand-alone program that converts Entrez Gene ASN.1 into XML. Entrez Gene data are stored as compressed binary Entrezgene-
Set ASN.1 files on the NCBI ftp site, and have the suffix .ags.gz. These are several-fold smaller than compressed XML files, resulting in
a significant savings of disk storage and network bandwidth. Normal processing by gene2xml produces text XML files with the same name but
with .xgs as the suffix.
OPTIONS
A summary of options is included below.
- Print usage message
-b File is Binary
-c File is Compressed
-i filename
Single Input file (standard input by default) when not using -p
-l Log processing (list files processed when using -p)
-o filename
Single Output file (standard output by default) when not using -p
-p path
Path to Files (if processing an entire directory)
-r path
Path for Results when using -p; defaults to the input directory
-t N Limit to the given Taxon ID (per http://www.ncbi.nlm.nih.gov/Taxonomy/)
-x Extract .ags to text .agc (format previously distributed)
-y Combine .agc to text .ags (for testing)
-z Combine .agc to binary .ags, then gzip
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asn2all(1), asn2asn(1), asn2xml(1), asndhuff(1), /usr/share/doc/ncbi-tools-bin/gene2xml.txt.gz, /usr/share/doc/libncbi6/ncbixml.txt.gz
NCBI 2005-05-16 GENE2XML(1)