11-30-2007
Hi.
There are almost 2 M hits with a Google search for code review checklist. The link that Yogesh Sawant provided is near the top ... cheers, drl
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==============================================
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Hello! What is the script for a checklist? This:
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1 "RedHat" on
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3 "Slackware" off
???
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LEARN ABOUT DEBIAN
seqfraggle
SEQFRAGGLE(1e) EMBOSS Manual for Debian SEQFRAGGLE(1e)
NAME
seqfraggle - Removes fragment sequences from DHF files.
SYNOPSIS
seqfraggle -dhfinpath dirlist -thresh integer -dhfoutdir outdir
seqfraggle -help
DESCRIPTION
seqfraggle is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Protein:3D
Structure" command group(s).
OPTIONS
Input section
-dhfinpath dirlist
This option specifies the location of DHF files (domain hits files) or other sequence files (input). A 'domain hits file' contains
database hits (sequences) with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH
family and are found from a search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using
SEQSEARCH. Alternatively, SEQFRAGGLE will accept sequence or sequence sets in any of the common formats. Default value: ./
Required section
-thresh integer
This option specifies the percentage of median length for definition of fragments. SEQFRAGGLE first determines the median length of all
the sequences in the input file, then discards any hit sequences which are not within a threshold percentage of the median length. The
remaining sequences are written to the output file. Default value: 50
Output section
-dhfoutdir outdir
This option specifies the location of DHF files (domain hits files) (output). A 'domain hits file' contains database hits (sequences)
with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family and are found from a
search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH. Alternatively, SEQFRAGGLE
will write output files in any of the common formats. Default value: ./
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
seqfraggle is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.
DOMSEARCH 0.1.0++20100721 08/11/2010 SEQFRAGGLE(1e)