10-31-2007
Could you paste some sample lines from the input file as well ...
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==========
RECORD 1
==========
RECORD 2
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RECORD 5
DATA LINE
==========
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The awk below produces an output with the original header and only the matching lines (which is good), but the output where the original line numbering in the match found on is used. I can not figure out how to sequentially number the output instead of using the original.
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Input File:
>Seq1
ASDADAFASFASFADGSDGFSDFSDFSDFSDFSDFSDFSDFSDFSDFSDFSD
>Seq2
SDASDAQEQWEQeqAdfaasd
>Seq3
ASDSALGHIUDFJANCAGPATHLACJHPAUTYNJKG
......
Desired Output File
>Seq1
ASDADAFASF
ASFADGSDGF
SDFSDFSDFS
DFSDFSDFSD
FSDFSDFSDF
SD
>Seq2 (4 Replies)
Discussion started by: patrick87
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PASTE(1) User Commands PASTE(1)
NAME
paste - merge lines of files
SYNOPSIS
paste [OPTION]... [FILE]...
DESCRIPTION
Write lines consisting of the sequentially corresponding lines from each FILE, separated by TABs, to standard output.
With no FILE, or when FILE is -, read standard input.
Mandatory arguments to long options are mandatory for short options too.
-d, --delimiters=LIST
reuse characters from LIST instead of TABs
-s, --serial
paste one file at a time instead of in parallel
-z, --zero-terminated
line delimiter is NUL, not newline
--help display this help and exit
--version
output version information and exit
AUTHOR
Written by David M. Ihnat and David MacKenzie.
REPORTING BUGS
GNU coreutils online help: <http://www.gnu.org/software/coreutils/>
Report paste translation bugs to <http://translationproject.org/team/>
COPYRIGHT
Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
SEE ALSO
Full documentation at: <http://www.gnu.org/software/coreutils/paste>
or available locally via: info '(coreutils) paste invocation'
GNU coreutils 8.28 January 2018 PASTE(1)