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Top Forums UNIX for Dummies Questions & Answers Remove Duplicate lines from File Post 302135416 by GST on Sunday 9th of September 2007 08:57:29 AM
Old 09-09-2007
Hi Radoulov, thanks a lot for your suppport - your script is working for me now!

Real good job Smilie

Cheers
George
 

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SGE_SHEPHERD(8) 				      Sun Grid Engine Administrative Commands					   SGE_SHEPHERD(8)

NAME
sge_shepherd - Sun Grid Engine single job controlling agent SYNOPSIS
sge_shepherd DESCRIPTION
sge_shepherd provides the parent process functionality for a single Sun Grid Engine job. The parent functionality is necessary on UNIX systems to retrieve resource usage information (see getrusage(2)) after a job has finished. In addition, the sge_shepherd forwards signals to the job, such as the signals for suspension, enabling, termination and the Sun Grid Engine checkpointing signal (see sge_ckpt(1) for details). The sge_shepherd receives information about the job to be started from the sge_execd(8). During the execution of the job it actually starts up to 5 child processes. First a prolog script is run if this feature is enabled by the prolog parameter in the cluster configura- tion. (See sge_conf(5).) Next a parallel environment startup procedure is run if the job is a parallel job. (See sge_pe(5) for more infor- mation.) After that, the job itself is run, followed by a parallel environment shutdown procedure for parallel jobs, and finally an epilog script if requested by the epilog parameter in the cluster configuration. The prolog and epilog scripts as well as the parallel environment startup and shutdown procedures are to be provided by the Sun Grid Engine administrator and are intended for site-specific actions to be taken before and after execution of the actual user job. After the job has finished and the epilog script is processed, sge_shepherd retrieves resource usage statistics about the job, places them in a job specific subdirectory of the sge_execd(8) spool directory for reporting through sge_execd(8) and finishes. sge_shepherd also places an exit status file in the spool directory. This exit status can be viewed with qacct -j JobId (see qacct(1)); it is not the exit status of sge_shepherd itself but of one of the methods executed by sge_shepherd. This exit status can have several mean- ings, depending on in which method an error occurred (if any). The possible methods are: prolog, parallel start, job, parallel stop, epi- log, suspend, restart, terminate, clean, migrate, and checkpoint. The following exit values are returned: 0 All methods: Operation was executed successfully. 99 Job script, prolog and epilog: When FORBID_RESCHEDULE is not set in the configuration (see sge_conf(5)), the job gets re-queued. Otherwise see "Other". 100 Job script, prolog and epilog: When FORBID_APPERROR is not set in the configuration (see sge_conf(5)), the job gets re-queued. Oth- erwise see "Other". Other Job script: This is the exit status of the job itself. No action is taken upon this exit status because the meaning of this exit status is not known. Prolog, epilog and parallel start: The queue is set to error state and the job is re-queued. Parallel stop: The queue is set to error state, but the job is not re-queued. It is assumed that the job itself ran successfully and only the clean up script failed. Suspend, restart, terminate, clean, and migrate: Always successful. Checkpoint: Success, except for kernel checkpointing: checkpoint was not successful, did not happen (but migration will happen by Sun Grid Engine). RESTRICTIONS
sge_shepherd should not be invoked manually, but only by sge_execd(8). FILES
sgepasswd contains a list of user names and their corresponding encrypted passwords. If available, the password file will be used by sge_shepherd. To change the contents of this file please use the sgepasswd command. It is not advised to change that file manu- ally. <execd_spool>/job_dir/<job_id> job specific directory SEE ALSO
sge_intro(1), sge_conf(5), sge_execd(8). COPYRIGHT
See sge_intro(1) for a full statement of rights and permissions. SGE 6.2u5 $Date$ SGE_SHEPHERD(8)
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