I have been working on some code for a while, that will parse a log file, look for a specified time discrepancy between entries, and then print that line +/- n other lines out to a file...
#!/bin/bash
file=$1 # The input log file
maxTime=$2 # The time discrepancy to look for
n=$3 ... (1 Reply)
i have these values inside variable $blah
BUNGA TERATAI 3 5055 ITH 1 0 0 0 1 1
JADE TRADER 143W ITH 4 0 0 0 4 4
MOL SPLENDOR 0307A ITH 3 0 0 0 3 3
so how do I split them into array with the... (4 Replies)
I want to run an awk split on a value that has been pushed through an array and I was wondering what the syntax should be??
e.g. running time strings through an array and trying to examine just minutes:
12:25:30
10:15:13
08:55:23
awk '
NR==FNR{
... (2 Replies)
Hi Everyone,
#!/usr/bin/perl
use strict;
use warnings;
my @test=("a;b;qqq;c;d","a;b;ggg;c;d","a;b;qqq;c;d");
would like to split the @test array into two array:
@test1=(("a;b;qqq;c;d","a;b;qqq;c;d"); and @test2=("a;b;ggg;c;d");
means search for 3rd filed.
Thanks
find the... (0 Replies)
Hi,
I have the following lines that I would like to see in an array for easy comparisons and printing:
Example 1:
field1,field2,field3,field4,field5
value1,value2,value3,value4,value5Example 2:
field1,field3,field4,field2,field5,field6,field7... (7 Replies)
I have an array and two variables as below,
I need to check if $datevar is present in $filename.
If so, i need to replace $filename with the values in the array.
I need the output inside an ARRAY
How can this be done.
Any help will be appreciated. Thanks in advance. (2 Replies)
Hi all,
I want to split a string into array based on given delimiter, for example:
String:
"foo|bar|baz"
with delimiter "|"
into array:
strArr to strArr with values foo, bar and baz.
Thanks a lot.
Roy987 (5 Replies)
value=malayalam
# i need to store the value in an array by splitting the character
#the output i need is
m
a
l
a
y
a
l
a
m
Please use CODE tags for output data as well as required by forum rules! (5 Replies)
Test1.txt
Tom is hot
Test.sh
filename="/directory/Test1.txt"
set - A store
while IFS= read value
do
awk '{split($value,store," ")}'
done < "$filename"
echo ${#sore}
From the code in the executing file, I would like each... (8 Replies)
Discussion started by: TestKing
8 Replies
LEARN ABOUT DEBIAN
bp_bioflat_index
BP_BIOFLAT_INDEX(1p) User Contributed Perl Documentation BP_BIOFLAT_INDEX(1p)NAME
bioflat_index.pl - index sequence files using Bio::DB::Flat
DESCRIPTION
Create or update a biological sequence database indexed with the
Bio::DB::Flat indexing scheme. The arguments are a list of flat files
containing the sequence information to be indexed.
USAGE
bioflat_index.pl <options> file1 file2 file3...
Options:
--create Create or reinitialize the index. If not specified,
the index must already exist.
--format <format> The format of the sequence files. Must be one
of "genbank", "swissprot", "embl" or "fasta".
--location <path> Path to the directory in which the index files
are stored.
--dbname <name> The symbolic name of the database to be created.
--indextype <type> Type of index to create. Either "bdb" or "flat".
"binarysearch" is the same as "flat".
Options can be abbreviated. For example, use -i for --indextype.
The following environment variables will be used as defaults if the corresponding options are not provided:
OBDA_FORMAT format of sequence file
OBDA_LOCATION path to directory in which index files are stored
OBDA_DBNAME name of database
OBDA_INDEX type of index to create
perl v5.14.2 2012-03-02 BP_BIOFLAT_INDEX(1p)