TABMERGE(1p)						User Contributed Perl Documentation					      TABMERGE(1p)

NAME

       tabmerge - unify delimited files on common fields

SYNOPSIS

	 tabmerge [action] [options] file1 file2 [...]

       Actions:

	 --min		      Take only fields present in all files [DEFAULT]
	 --max		      Take all fields present
	 -f|--fields=f1[,f2]  Take only the fields mentioned in the
			      comma-separated list

       Options:

	 -l|--list	      List available fields
	 --fs=x 	      Use "x" as the field separator
			      (default is tab "	")
	 --rs=x 	      Use "x" as the record separator
			      (default is newline "
")
	 -s|--sort=f1[,f2]    Sort data ASCII-betically on field(s)
	 --stdout	      Print data in original delimited format
			      (i.e., not in a table format)

	 --help 	      Show brief help and quit
	 --man		      Show full documentation

DESCRIPTION

       This program merges the fields -- not the rows -- of delimited text files.  That is, if several files are almost but not quite entirely
       unlike each other in their structure (in their field names, numbers or orders), this script allows you to easily unify the files into one
       file with all the same fields.  The output can be based on fields as determined by the three "action" flags.

       For the following examples, consider three files that contain the following fields:

	 +------------+---------------------------------+
	 | File       | Fields				|
	 +------------+---------------------------------+
	 | merge1.tab | name, type, position		|
	 | merge2.tab | name, type, position, lod_score |
	 | merge3.tab | name, position			|
	 +------------+---------------------------------+

       To list all available fields in the files and the number of times they are present:

	 $ tabmerge --list merge*
	 +-----------+-------------------+
	 | Field     | No. Times Present |
	 +-----------+-------------------+
	 | lod_score | 1		 |
	 | name      | 3		 |
	 | position  | 3		 |
	 | type      | 2		 |
	 +-----------+-------------------+

       To merge the files on the minimum overlapping fields:

	 $ tabmerge merge*
	 +----------+----------+
	 | name     | position |
	 +----------+----------+
	 | RM104    | 2.30     |
	 | RM105    | 4.5      |
	 | TX5509   | 10.4     |
	 | UU189    | 19.0     |
	 | Xpsm122  | 3.3      |
	 | Xpsr9556 | 4.5      |
	 | DRTL     | 2.30     |
	 | ALTX     | 4.5      |
	 | DWRF     | 10.4     |
	 +----------+----------+

       To merge the files and include all the fields:

	 $ tabmerge --max merge*
	 +-----------+----------+----------+--------+
	 | lod_score | name	| position | type   |
	 +-----------+----------+----------+--------+
	 |	     | RM104	| 2.30	   | RFLP   |
	 |	     | RM105	| 4.5	   | RFLP   |
	 |	     | TX5509	| 10.4	   | AFLP   |
	 | 2.4	     | UU189	| 19.0	   | SSR    |
	 | 1.2	     | Xpsm122	| 3.3	   | Marker |
	 | 1.2	     | Xpsr9556 | 4.5	   | Marker |
	 |	     | DRTL	| 2.30	   |	    |
	 |	     | ALTX	| 4.5	   |	    |
	 |	     | DWRF	| 10.4	   |	    |
	 +-----------+----------+----------+--------+

       To merge and extract just the "name" and "type" fields:

	 $ tabmerge -f name,type merge*
	 +----------+--------+
	 | name     | type   |
	 +----------+--------+
	 | RM104    | RFLP   |
	 | RM105    | RFLP   |
	 | TX5509   | AFLP   |
	 | UU189    | SSR    |
	 | Xpsm122  | Marker |
	 | Xpsr9556 | Marker |
	 | DRTL     |	     |
	 | ALTX     |	     |
	 | DWRF     |	     |
	 +----------+--------+

       To merge the files on just the "name" and "lod_score" fields and sort on the name:

	 $ tabmerge -f name,lod_score -s name merge*
	 +----------+-----------+
	 | name     | lod_score |
	 +----------+-----------+
	 | ALTX     |		|
	 | DRTL     |		|
	 | DWRF     |		|
	 | RM104    |		|
	 | RM105    |		|
	 | TX5509   |		|
	 | UU189    | 2.4	|
	 | Xpsm122  | 1.2	|
	 | Xpsr9556 | 1.2	|
	 +----------+-----------+

       To do the same but mimic the original tab-delimited input:

	 $ tabmerge -f name,lod_score -s name --stdout merge*
	 name	 lod_score
	 ALTX
	 DRTL
	 DWRF
	 RM104
	 RM105
	 TX5509
	 UU189	 2.4
	 Xpsm122 1.2
	 Xpsr9556	 1.2

       Why would you want to do this?  Suppose you have several delimited text files with nearly the same structure and want to create just one
       file from them, but the fields may be in a different order in each file and/or some files may contain more or fewer fields than others.
       (As far-fetched as it may seem, it happens to the author more than he'd like.)

SEE ALSO

       o   Text::RecordParser

       o   Text::TabularDisplay

AUTHOR

       Ken Youens-Clark <kclark@cpan.org>.

LICENSE AND COPYRIGHT

       Copyright (C) 2006-10 Ken Youens-Clark.	All rights reserved.

       This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
       the Free Software Foundation; version 2.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
       MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

perl v5.10.1							    2010-07-26							      TABMERGE(1p)