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UNIX for Dummies Questions & Answers
Extracting Filename from Fullpath
Post 302114951 by njoshi on Thursday 19th of April 2007 05:34:57 PM
04-19-2007
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LEARN ABOUT DEBIAN
bp_gccalc
BP_GCCALC(1p) User Contributed Perl Documentation BP_GCCALC(1p) NAME
gccalc - GC content of nucleotide sequences SYNOPSIS
gccalc [-f/--format FORMAT] [-h/--help] filename or gccalc [-f/--format FORMAT] < filename or gccalc [-f/--format FORMAT] -i filename DESCRIPTION
This scripts prints out the GC content for every nucleotide sequence from the input file. OPTIONS
The default sequence format is fasta. The sequence input can be provided using any of the three methods: unnamed argument gccalc filename named argument gccalc -i filename standard input gccalc < filename FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org HISTORY
Based on script code (see bottom) submitted by cckim@stanford.edu Submitted as part of bioperl script project 2001/08/06 perl v5.14.2 2012-03-02 BP_GCCALC(1p)