Bio::Search::Result::hmmer3Result(3pm)			User Contributed Perl Documentation		    Bio::Search::Result::hmmer3Result(3pm)

NAME

       Bio::Search::Result::hmmer3Result - DESCRIPTION of Object

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the object here

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Thomas Sharpton
       Email thomas.sharpton@gmail.com

       Describe contact details here

CONTRIBUTORS

       Additional contributors names and emails here

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = new Bio::Search::Result::hmmer3Result.pm();
	Function: Builds a new Bio::Search::Result::hmmer3Result.pm object
	Returns : an instance of Bio::Search::Result::hmmer3Result.pm
	Args	: -hmm_name => string, name of hmm file
		  -sequence_file => name of the sequence file

   hmm_name
	Title	: hmm_name
	Usage	: $obj->hmm_name($newval)
	Function: Get/Set the value of hmm_name
	Returns : value of hmm_name
	Args	: newvalue (optional)

   sequence_file
	Title	: sequence_file
	Usage	: $obj->sequence_file($newval)
	Function: Get/Set the value of sequence_file
	Returns : value of sequence_file
	Args	: newvalue (optional)

   next_model
	Title	: next_model
	Usage	: my $domain = $result->next_model
	Function: Returns the next domain - this
		  is an alias for next_hit
	Returns : L<Bio::Search::Hit::HitI> object
	Args	: none

   models
	Title	: models
	Usage	: my @domains = $result->models;
	Function: Returns the list of HMM models seen - this
		  is an alias for hits()
	Returns : Array of L<Bio::Search::Hit::HitI> objects
	Args	: none

   rewind
	Title	: rewind
	Usage	: $result->rewind;
	Function: Allow one to reset the Hit iteration to the beginning
		  Since this is an in-memory implementation
	Returns : none
	Args	: none

perl v5.14.2							    2012-03-02				    Bio::Search::Result::hmmer3Result(3pm)