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Full Discussion: Need help to convert Flat file to HTML
Top Forums Shell Programming and Scripting Need help to convert Flat file to HTML Post 302100340 by anbu23 on Tuesday 19th of December 2006 07:30:21 AM
Old 12-19-2006
Code:
awk -v border=5 -v width=10 -v bgcolor="black" -v fgcolor="red" '
BEGIN { printf("<table border=\"%d\" bordercolor=\"%s\" width=\"%d\" bgcolor=\"%s\n>",border,bgcolor,width,fgcolor) }
{       print "<tr>";
        for( i = 1 ; i <= NF ; ++i )
                print "<td> "$i" </td>"
        print "</tr>"
}
END {  print "</table>" } ' file

Last edited by anbu23; 12-20-2006 at 01:31 AM..
 

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LEARN ABOUT DEBIAN

bio::graphics::glyph::redgreen_segment

Bio::Graphics::Glyph::redgreen_segment(3pm)		User Contributed Perl Documentation	       Bio::Graphics::Glyph::redgreen_segment(3pm)

NAME

       Bio::Graphics::Glyph::redgreen_segment - The "redgreen_segments" glyph

SYNOPSIS

       See Bio::Graphics::Panel and Bio::Graphics::Glyph.

DESCRIPTION

       This glyph is similar to the graded_segments glyph except that it generates a green->red gradient suitable for use with microarray data.  A
       feature score of 0 is full green; a feature score of 1.0 is full red; intermediate scores are shades of yellow.

   OPTIONS
       The following options are standard among all Glyphs.  See Bio::Graphics::Glyph for a full explanation.

	 Option      Description		      Default
	 ------      -----------		      -------

	 -fgcolor      Foreground color 	      black

	 -outlinecolor Synonym for -fgcolor

	 -bgcolor      Background color 	      turquoise

	 -fillcolor    Synonym for -bgcolor

	 -linewidth    Line width		      1

	 -height       Height of glyph		      10

	 -font	       Glyph font		      gdSmallFont

	 -connector    Connector type		      0 (false)

	 -connector_color
		       Connector color		      black

	 -label        Whether to draw a label	      0 (false)

	 -description  Whether to draw a description  0 (false)

BUGS

       Please report them.

SEE ALSO

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
       Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
       Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
       Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
       Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
       Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

       Lincoln Stein <lstein@cshl.org>

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-02-20			       Bio::Graphics::Glyph::redgreen_segment(3pm)
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