06-07-2006
My target limit is 60 million records.
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LEARN ABOUT DEBIAN
dbswiss
DBSWISS(1) User Commands DBSWISS(1)
NAME
dbSwiss - create DBM version of Swiss-Prot data
SYNOPSIS
/usr/share/librg-utils-perl/dbSwiss [OPTIONS]
/usr/share/librg-utils-perl/dbSwiss --datadir /data/swissprot --infile /data/swissprot/uniprot_sprot.dat
/usr/share/librg-utils-perl/dbSwiss [--help] [--man]
DESCRIPTION
dbSwiss creates DBM version of Swiss-Prot data. This procedure is to replace splitSwiss.pl. splitSwiss.pl saves Swiss-Prot records in
separate files resulting in over 13 million relatively tiny files that take very long to create and rsync. dbSwiss instead saves each
record into a DBM database that is optimized for fast retrieval.
OPTIONS
-d, --datadir=path
directory of database files, default: '/mnt/project/rost_db/data/swissprot'
--debug
--nodebug
--first20
--nofirst20
process only first 20 records, for debugging
--help
-i, --infile=path
Swiss-Prot data flatfile, default: '/mnt/project/rost_db/data/swissprot/uniprot_sprot.dat'.
--man
--quiet
--noquiet
do not print progress status
--readback
--noreadback
read records back after storing and print them
--table
name of database table and consequently the base name of database files, default: 'dbswiss'
--version
-w, --workdir=path
Optional working directory. Automatically created and removed if not defined.
AUTHOR
Laszlo Kajan <lkajan@rostlab.org>
1.0.43 2011-11-28 DBSWISS(1)