05-11-2006
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
I have got an application through which an user will submit an address like "c:\tuser\abc".
This application calls a script and passes the address to the scripts positional parameter say $1.
So $1 should contain "c:\tuser\abc", but when $1 is echoed the "\t" and "\a" are interpreted to... (4 Replies)
Discussion started by: puspendu
4 Replies
2. UNIX for Dummies Questions & Answers
I couldn't seem to make 'HOME' key work on my remote windows ssh client to a Fedora Core3 server (the home key works perfectly when i'm physically on site.)
To my surprise, using control+V it seems that both my home and insert key send the same escape sequence ^So it must be my windows SSH client... (0 Replies)
Discussion started by: grossgermany
0 Replies
3. Shell Programming and Scripting
Hi all,
I have a requirement where the variable name starts with $, like
$Amd=/home/student/test/
How to work wit it? can some one help me, am in gr8 confusion:confused: (5 Replies)
Discussion started by: shreekrishnagd
5 Replies
4. Shell Programming and Scripting
Hi All,
I have added the script command to user profile so that to record the on-screen data.But when i i checked the O/P i could see lot of escape sequence is there way to remove it. (2 Replies)
Discussion started by: cutechaps
2 Replies
5. Shell Programming and Scripting
$table is the variable which contains name of the file.
Filename may have the special character $. Need to escape $ .
Tried below options to escape dollar:
\$$table
"\$"$table""
what is the escape sequence for egrep function..?
Below is the code snippet-
my $table;
foreach... (3 Replies)
Discussion started by: xylus77
3 Replies
6. Red Hat
I ran the following grep and sed command.
grep "\t" emp.txt
sed -n '/\t/p' emp.txt
grep treated the '\' as to escape t and took the pattern as literal t whereas sed took the pattern as tab.
That means , grep doesn't understand escape sequence!!!!!!
what to do to make grep... (8 Replies)
Discussion started by: ravisingh
8 Replies
7. Shell Programming and Scripting
Friends,
In the file i am having more then 100 lines like,
File1 had the values like this:
#Example East.server_01=EAST.SERVER_01
East.server_01=EAST.SERVER_01
West.server_01=WEST.SERVER_01
File2 had the values like this:
#Example EAST.SERVER_01=http://yahoo.com... (3 Replies)
Discussion started by: jothi basu
3 Replies
8. Solaris
Hello,
I am running Solaris 8. When issuing the command "stty lcase" all text which is output to the terminal are capitalized. Letters that are supposed to be capitals are preceded by a backslash during output. All text which is input is converted to lower case. This is the expected behaviour... (5 Replies)
Discussion started by: rstor
5 Replies
9. Shell Programming and Scripting
Hi
I am try to use sed to remove decleration information from an XML file however their are special characters in the string and sed is not able to parse it . I am using the following commond.
sed -e "s/xmlns=http://www.abc.com/integration/services/testtemplate1//g" Orginal.xml... (3 Replies)
Discussion started by: jimmyb
3 Replies
10. UNIX for Dummies Questions & Answers
Having a doubt on how Function keys are mapped.
1. In my HPUX box my infocmp shows that kf1 (F1 key mapping) is not mapped. But somehow I am able to use an Informix form which requires navigation using F1 keys.
vt100-w|vt100-w-am|dec vt100 132 cols (w/advanced video),
bce, bw, ccc,... (3 Replies)
Discussion started by: clemansy
3 Replies
LEARN ABOUT DEBIAN
blastclust
BLASTCLUST(1) NCBI Tools User's Manual BLASTCLUST(1)
NAME
blastclust - BLAST score-based single-linkage clustering
SYNOPSIS
blastclust [-] [-C] [-L X] [-S X] [-W N] [-a N] [-b F] [-c filename] [-d filename] [-e F] [-i filename] [-l filename] [-o filename] [-p F]
[-r filename] [-s filename] [-v [filename]]
DESCRIPTION
blastclust automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in
case of proteins or Mega BLAST algorithm for DNA. In the latter case a single Mega BLAST search is performed for all the sequences combined
against a database created from the same sequences. blastclust finds pairs of sequences that have statistically significant matches and
clusters them using single-linkage clustering.
OPTIONS
A summary of options is included below.
- Print usage message
-C Complete unfinished clustering
-L X Length coverage threshold (default = 0.9)
-S X Score coverage threshold (bit score / length if < 3.0, percentage of identities otherwise; default = 1.75)
-W N Use words of size N (length of best perfect match; zero invokes default behavior: 3 for proteins, 32 for nucleotides)
-a N Number of CPU's to use (default = 1)
-b F Do not require coverage on both neighbours
-c filename
Read advanced options from configuration file filename
-d filename
Input as a database
-e F Disable id parsing in database formatting
-i filename
FASTA input file (program will format the database and remove files in the end; default = stdin)
-l filename
Restrict reclustering to id list in filename
-o filename
Output file for list of clusters (default = stdout)
-p F Input is nucleotides, not proteins.
-r filename
Restore neighbors for reclustering from filename
-s filename
Save all neighbours to filename
-v [filename]
Print verbose progress messages (to filename)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
blast(1), formatdb(1), /usr/share/doc/blast2/blastclust.html, <http://www.ncbi.nlm.nih.gov/BLAST/>
NCBI
2004-06-25 BLASTCLUST(1)