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Top Forums Shell Programming and Scripting please can any one help me bundle several files into one Post 302072099 by swissnez on Thursday 27th of April 2006 11:38:03 AM
Old 04-27-2006
Hammer & Screwdriver please can any one help me bundle several files into one

#!/bin/sh
#call function from loop
filevalidate()
{
case $# in
0) echo "usage enshar file1 file2 ... > outputfile ! " >/deb/sterr ;;
*) for filename
do

if [ $filename -gt 1 ]; then
echo "invalid pathname > try bin " $filename >/dev/stderr
exit 1
fi

if [ -d $filename ]; then
echo "is a directory!" $filename >/dev/stderr
exit 2
fi

if [ ! -r $filename ] || [ ! -f $filename ]; then
echo "unreadable or non existant " $filename >/dev/stderr
exit 3
fi

grep -- "^!EnShAr!" "$filename"

if [ $? -eq 0 ]; then
echo "cant enshar it or already enshared! " $filename >/dev/stderr
exit 5
fi
if [ $filename = "" ]; then
echo "usage is enshar file1 file2 .. > outputfile" >/dev/stderr
exit 6
fi

done ;;
esac
}


for filename in $*
do
filevalidate $filename
done

for filename in $*
do
echo cat \>$filename \<\<"\\!EnShAr!"
cat <$filename
echo "!EnShAr!"
echo set \`cksum $filename\`
set `cksum $filename`
echo "test \$filename = $filename || echo \$0: BAD checksum in
$filename >&2"
done

exit 0



#this is what i have so far and only works 80%
#kind regards
 

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ASN2XML(1)						     NCBI Tools User's Manual							ASN2XML(1)

NAME
asn2xml - translate biological data from ASN.1 to XML SYNOPSIS
asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s] DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that it converts packed sequence data back into human-readable ASCII text. OPTIONS
A summary of options is included below. - Print usage message -b F Input asnfile in text mode -e Input is a Seq-entry -i filename Read ASN.1 from filename (default is stdin) -l filename Log errors to filename (default is stderr) -o filename Write XML to filename (default is stdout) -s Input is a Seq-submit AUTHOR
The National Center for Biotechnology Information. SEE ALSO
asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml, /usr/share/doc/libncbi6/ncbixml.txt.gz NCBI
2005-05-16 ASN2XML(1)
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