09-20-2002
Yes so far all suggestions are correct but let's clarify some points.
Making the mulitple lines into a single line does NOT tamper with the data as in fact it is ONE continuous line and is presented on the Protein description web pages as multiple lines for ease of display.
The problem comes in doing matches across line boundaries if the data isn NOT presented in one single line to the ksh script.
If we have a solution to make the searches possible across line boundaries then we have a winner.
My wife and I are carrying out tests with the ksh script and we came up with protein sequences that have many lines some times as many as 50.
So either we try to solve the ksh script, or PERL or we have to try amongst our C gurus which is why I posted there as well.
Someone appeared to be annoyed about my posting under C.
To clarify we aren't doing homework and this is an essential part of an advanced breast cancer research dissertation.
Thanks to all you sincere guys for your efforts
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
hey gents,
I'm working on something that will use snmpwalk to query the devices on my network and retreive the device name, device IP, device model and device serial. I'm using Nmap for the enumeration and sed to clean up the results for use by snmpwalk. Once i get all the data organized I'm... (8 Replies)
Discussion started by: mitch
8 Replies
2. Shell Programming and Scripting
Hello,
Did anyone know how to write a perl script to merge the multi-line into a single line where each line with start at timestamp
Input-->
timestamp=2009-11-10-04.55.20.829347;
a;
b;
c;
timestamp=2009-11-10-04.55.20.829347;
aa;
bb;
cc; (5 Replies)
Discussion started by: happyday
5 Replies
3. Shell Programming and Scripting
Hi all,
I have made at small script to make a simple calculation on a file which is formatted in this way:
I want to create a new file in which the value of particular line minus the previous line is printed.
So my wanted output is:
I have made the following program to do the job... (5 Replies)
Discussion started by: s052866
5 Replies
4. Shell Programming and Scripting
Hi,
I have a requirement with,
No~Dt~Notes
1~2011/08/1~"aaa
bbb
ccc
ddd
eee
fff
ggg
hhh"
Single column alone got splitted into multiple lines.
I require the output as
No~Dt~Notes
1~2011/08/1~"aaa<>bbb<>ccc<>ddd<>eee<>fff<>ggg<>hhh"
mean to say those new lines to be... (1 Reply)
Discussion started by: Bhuvaneswari
1 Replies
5. Shell Programming and Scripting
Hi,
My Oracle query is returing below o/p
----------------------------------------------------------
Ins trnas value
a lkp1 x
a lkp1 y
b lkp1 a
b lkp2 x
b lkp2 y ... (7 Replies)
Discussion started by: gvk25
7 Replies
6. Shell Programming and Scripting
Hi All,
I have 4 big files which contains one big line containing formatted character records, I need to format each file in such way that each File will have 95 Characters per line. Last line of each file will have newline character at end.
Before:-
File Name:- File1.dat
102 121340560... (10 Replies)
Discussion started by: lancesunny
10 Replies
7. Shell Programming and Scripting
here is what i want to achieve.. i have a file with below contents
cat fileName
blah blah blah
.
.DROP this
REJECT that
.
--sport 7800 -j REJECT --reject-with icmp-port-unreachable
--dport 7800 -j REJECT --reject-with icmp-port-unreachable
.
.
.
more blah blah blah
--dport 3306... (14 Replies)
Discussion started by: vivek d r
14 Replies
8. UNIX for Dummies Questions & Answers
Hi all,
How can i display the middle line of a file using a single line command? (6 Replies)
Discussion started by: Lakme Pemmaiah
6 Replies
9. UNIX for Beginners Questions & Answers
example of problem:
when I echo "$e" >> /home/cogiz/file.txt
result prints to file as:AA
BB
CC
I need it to save to file as this:AA BB CC
I know it's probably something really simple but any help would be greatly appreciated.
Thank You.
Cogiz (7 Replies)
Discussion started by: cogiz
7 Replies
10. Shell Programming and Scripting
I want to read the log file which was generate from other command . And the output was having multi line in log files for job name and server name. But i need to make all the logs on one line
Source file
07/15/2018 17:02:00 TRANSLOG_1700 Server0005_SQL ... (2 Replies)
Discussion started by: ranjancom2000
2 Replies
LEARN ABOUT DEBIAN
elvfmt
ELVFMT(1) User commands ELVFMT(1)
NAME
elvfmt - adjust line-length for paragraphs of text
SYNOPSIS
elvfmt [-w width | -width] [-s] [-c] [-i chars] [-C] [-M] [file]...
VERSION
This page describes the Elvis 2.2_0 version of elvfmt. See elvis(1).
DESCRIPTION
elvfmt is a simple text formatter. It inserts or deletes newlines, as necessary, to make all lines in a paragraph be approximately the
same width. It preserves indentation and word spacing.
If you don't name any files on the command line, then elvfmt will read from stdin.
It is typically used from within vi(1) or elvis(1) to adjust the line breaks in a single paragraph. To do this, move the cursor to the top
of the paragraph, type "!}elvfmt", and hit <Return>.
OPTIONS
-w width or -width
Use a line width of width characters instead of the default of 72 characters.
-s Don't join lines shorter than the line width to fill paragraphs.
-c Try to be smarter about crown margins. Specifically, this tells elvfmt to expect the first line of each paragraph to have a differ-
ent indentation than subsequent lines. If text from the first input line is wrapped onto the second output line, then elvfmt will
scan ahead to figure out what indentation it should use for the second output line, instead of reusing the first line's indentation.
-i chars
Allow the indentation text to include any character from chars, in addition to spaces and tabs. You should quote the chars list to
protect it from the shell.
-C and -M
These are shortcuts for combinations of other flags. is short for and is useful for reformatting C/C++ comments. is short for
and is useful for reformatting email messages.
SEE ALSO
vi(1), elvis(1)
AUTHOR
Steve Kirkendall
kirkenda@cs.pdx.edu
ELVFMT(1)