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Top Forums Shell Programming and Scripting Can this be made into one single line? Post 28571 by Perderabo on Friday 20th of September 2002 08:40:56 AM
Old 09-20-2002
Like Optimus_P, I don't understand why the OP is ignoring my solution to his problem. For the record, when the above input data is run against my script, it outputs:
Code:
Line: 20 At position 1 2 unmatched characters
Line: 20 At position 3 MATCH: rrrgds
Line: 20 At position 9 43 trailing characters
pvRRRGDSrgsllsprpvsylkgssggpllcpfghavgifraavctrgva


Line: 49 At position 1 39 unmatched characters
Line: 49 At position 40 MATCH: rhrars
Line: 49 At position 46 6 trailing characters
iierlhglsafslhsyspgeinrvasclrklgvpplrvwRHRARSvrarl

I then joined all of the lines together into one superline. And I commented out the 'echo "$image"' in my script so that it won't print out the line with matches upshifted. When the superline is run against my script, it outputs:
Code:
Line: 1 At position 1 952 unmatched characters
Line: 1 At position 953 MATCH: rrrgds
Line: 1 At position 959 289 unmatched characters
Line: 1 At position 1248 MATCH: rgrfvt
Line: 1 At position 1254 1186 unmatched characters
Line: 1 At position 2440 MATCH: rhrars
Line: 1 At position 2446 65 trailing characters

So I got one more match. This explains the motivation for trying to join the lines. I think a better solution is to modify the scripts to find matches across line boundaries. Eliminating the line boundaries is hard and neither of the solutions posted worked very well.

The data file has 2510 letters. That exceeds the maximum line that vi can handle, at least on HP-UX. So vi didn't work. As for the tr solution, I tried:
tr -s "\n" < file1 > file2
which kinda worked, but it left the file with no newline characters at all. Thus the file had zero lines. I used:
echo >> file2
to correct this problem.

At this point, my script worked and spit out the above results, but at some point, ksh will balk at reading a giant line. That's why switching to an algorithm that can match across line boundaries would be the better approach.
 

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JOIN(1) 						    BSD General Commands Manual 						   JOIN(1)

NAME
join -- relational database operator SYNOPSIS
join [-a file_number | -v file_number] [-e string] [-j file_number field] [-o list] [-t char] [-1 field] [-2 field] file1 file2 DESCRIPTION
The join utility performs an ``equality join'' on the specified files and writes the result to the standard output. The ``join field'' is the field in each file by which the files are compared. The first field in each line is used by default. There is one line in the output for each pair of lines in file1 and file2 which have identical join fields. Each output line consists of the join field, the remaining fields from file1 and then the remaining fields from file2. The default field separators are tab and space characters. In this case, multiple tabs and spaces count as a single field separator, and leading tabs and spaces are ignored. The default output field separator is a single space character. Many of the options use file and field numbers. Both file numbers and field numbers are 1 based, i.e. the first file on the command line is file number 1 and the first field is field number 1. The following options are available: -a file_number In addition to the default output, produce a line for each unpairable line in file file_number. (The argument to -a must not be preceded by a space; see the COMPATIBILITY section.) -e string Replace empty output fields with string. -o list The -o option specifies the fields that will be output from each file for each line with matching join fields. Each element of list has the form 'file_number.field', where file_number is a file number and field is a field number. The elements of list must be either comma (``,'') or whitespace separated. (The latter requires quoting to protect it from the shell, or, a simpler approach is to use multiple -o options.) -t char Use character char as a field delimiter for both input and output. Every occurrence of char in a line is significant. -v file_number Do not display the default output, but display a line for each unpairable line in file file_number. The options -v 1 and -v 2 may be specified at the same time. -1 field Join on the field'th field of file 1. -2 field Join on the field'th field of file 2. When the default field delimiter characters are used, the files to be joined should be ordered in the collating sequence of sort(1), using the -b option, on the fields on which they are to be joined, otherwise join may not report all field matches. When the field delimiter char- acters are specified by the -t option, the collating sequence should be the same as sort(1) without the -b option. If one of the arguments file1 or file2 is ``-'', the standard input is used. The join utility exits 0 on success, and >0 if an error occurs. COMPATIBILITY
For compatibility with historic versions of join, the following options are available: -a In addition to the default output, produce a line for each unpairable line in both file 1 and file 2. (To distinguish between this and -a file_number, join currently requires that the latter not include any white space.) -j1 field Join on the field'th field of file 1. -j2 field Join on the field'th field of file 2. -j field Join on the field'th field of both file 1 and file 2. -o list ... Historical implementations of join permitted multiple arguments to the -o option. These arguments were of the form ``file_num- ber.field_number'' as described for the current -o option. This has obvious difficulties in the presence of files named ``1.2''. These options are available only so historic shell scripts don't require modification and should not be used. SEE ALSO
awk(1), comm(1), paste(1), sort(1), uniq(1) STANDARDS
The join command is expected to be IEEE Std 1003.2 (``POSIX.2'') compatible. BSD
April 28, 1995 BSD
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