Substr


 
Thread Tools Search this Thread
Top Forums UNIX for Dummies Questions & Answers Substr
# 1  
Old 07-26-2015
Sequences in the FASTA format can be more than one line..

An alternative would be:
Code:
awk 'length($2)>7 {print RS $0}' RS=\> ORS= FS='\n' file

 
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

HELP : awk substr

Hi, - In a file test.wmi Col1 | firstName | lastName 4003 | toto_titi_CT- | otot_itit - I want to have only ( colones $7,$13 and $15) with code 4003 and 4002. for colone $13 I want to have the whole name untill _CT- or _GC- 1- I used the command egrep with awk #egrep -i... (2 Replies)
Discussion started by: georg2014
2 Replies

2. Shell Programming and Scripting

How to use if/else if with substr?

I have a command like this: listdb ID923 -l |gawk '{if (substr($0,37,1)==1 && NR == 3)print "YES" else if (substr ($0,37,1)==0 && NR == 3) print "NO"}' This syntax doesn't work. But I was able to get this to work: listdb ID923 -l |gawk '{if (substr($0,37,1)==1 && NR == 3)print "YES"}' ... (4 Replies)
Discussion started by: newbie2010
4 Replies

3. Shell Programming and Scripting

awk substr

Hello life savers!! Is there any way to use substr in awk command for returning one part of a string from declared start and stop point? I mean I know we have this: substr(string, start, length) Do we have anything like possible to use in awk ? : substr(string, start, stop) ... (9 Replies)
Discussion started by: @man
9 Replies

4. UNIX for Dummies Questions & Answers

substr

can anybody explain this code? thanks in advance..:) (6 Replies)
Discussion started by: janani_kalyan
6 Replies

5. UNIX for Dummies Questions & Answers

substr of a file

Hi, i'm a newbie and i don't know unix... I'm a dba oracle. I need to cat the content of a file like this: > ps -eaf|grep pmon oracle 221422 1 0 Sep 17 - 7:20 ora_pmon_ORCL oracle 405626 1 0 Sep 17 - 8:39 ora_pmon_ORCL1 oracle 491534 1 0 ... (3 Replies)
Discussion started by: davyp74
3 Replies

6. UNIX for Dummies Questions & Answers

substr of a file

.wysiwyg { PADDING-RIGHT: 0px; PADDING-LEFT: 0px; BACKGROUND: #f5f5ff; PADDING-BOTTOM: 0px; MARGIN: 5px 10px 10px; FONT: 10pt verdana, geneva, lucida, 'lucida grande', arial, helvetica, sans-serif; COLOR: #000000; PADDING-TOP: 0px } .wysiwyg A:link { COLOR: #22229c } .wysiwyg_alink { COLOR:... (1 Reply)
Discussion started by: davyp74
1 Replies

7. Shell Programming and Scripting

substr not working

Hi I am trying to run this command in ksh ...its not working $line="123356572867116w1671716" actual_length = 16 cut_line=`awk 'BEGIN{print substr(ARGV,1,actual_length)}' "$line"` the substr is not giving me an output how can i make it done can anyone hwlp me on this cut_line=`awk... (2 Replies)
Discussion started by: pukars4u
2 Replies

8. Shell Programming and Scripting

get substr?

Hi, I have a long string like, aabab|bcbcbcbbc|defgh|paswd123 dedededede|efef|ghijklmn|paswd234 ghghghghgh|ijijii|klllkkk|paswd345 lmlmlmmm|nononononn|opopopopp|paswd456 This string is devided into one space between substrings. This substrings are, aabab|bcbcbcbbc|defgh|paswd123... (6 Replies)
Discussion started by: syamkp
6 Replies

9. UNIX for Dummies Questions & Answers

Substr

Hi, My input file is 41;2;xxxx;yyyyy.... 41;2;xxxx;yyyyy.... 41;2;xxxx;yyyyy.... .. .. I need to change the second field value from 2 to 1. i.e., 41;1;xxxx;yyyyy.... 41;1;xxxx;yyyyy.... 41;1;xxxx;yyyyy.... .. .. Thanks in advance. (9 Replies)
Discussion started by: deepakwins
9 Replies

10. Shell Programming and Scripting

Using substr

What is the more efficient way to do this (awk only and default FS) ? $ echo "jefe@alm"|awk '{pos = index($0, "@");printf ("USER: %s\n",substr ($0,1,pos-1))}' USER: jefe Thx in advance (2 Replies)
Discussion started by: Klashxx
2 Replies
Login or Register to Ask a Question
ppmtosixel(1)						      General Commands Manual						     ppmtosixel(1)

NAME
ppmtosixel - convert a portable pixmap into DEC sixel format SYNOPSIS
ppmtosixel [-raw] [-margin] [ppmfile] DESCRIPTION
Reads a portable pixmap as input. Produces sixel commands (SIX) as output. The output is formatted for color printing, e.g. for a DEC LJ250 color inkjet printer. If RGB values from the PPM file do not have maxval=100, the RGB values are rescaled. A printer control header and a color assignment table begin the SIX file. Image data is written in a compressed format by default. A printer control footer ends the image file. OPTIONS
-raw If specified, each pixel will be explicitly described in the image file. If -raw is not specified, output will default to com- pressed format in which identical adjacent pixels are replaced by "repeat pixel" commands. A raw file is often an order of magni- tude larger than a compressed file and prints much slower. -margin If -margin is not specified, the image will be start at the left margin (of the window, paper, or whatever). If -margin is speci- fied, a 1.5 inch left margin will offset the image. PRINTING
Generally, sixel files must reach the printer unfiltered. Use the lpr -x option or cat filename > /dev/tty0?. BUGS
Upon rescaling, truncation of the least significant bits of RGB values may result in poor color conversion. If the original PPM maxval was greater than 100, rescaling also reduces the image depth. While the actual RGB values from the ppm file are more or less retained, the color palette of the LJ250 may not match the colors on your screen. This seems to be a printer limitation. SEE ALSO
ppm(5) AUTHOR
Copyright (C) 1991 by Rick Vinci. 26 April 1991 ppmtosixel(1)