Extracting rows from a text file if the value of a column falls between a certain range


 
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Old 02-08-2013
Extracting rows from a text file if the value of a column falls between a certain range

Hi,

I have a file that looks like the following:

Code:
10      100080417       rs7915867       ILMN_1343295    12      6243093 7747537 
10      100190264       rs2296431       ILMN_1343295    12      6643093 6647537 
10      100719451       SNP94374        ILMN_1343295    12      6688093 7599537 
10      101217090       rs6584276       ILMN_1343295    12      6688093 6947537

I want to extract all the lines where the value in column 2 is within +/- 1,000,000 the range given by the values in columns 6 and 7 (i.e. either between the values in columns 6 and 7, or less than 1,000,000 smaller from the value in column 6, or less than 1,000,000 greater from the value in column 7) Thanks!
 
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EMPTY-PAGE(1)							 ExactImage Manual						     EMPTY-PAGE(1)

NAME
empty-page - empty page detector of the ExactImage toolkit SYNOPSIS
empty-page [option...] {-i | --input} input-file empty-page {-h | --help} DESCRIPTION
ExactImage is a fast C++ image processing library. Unlike many other library frameworks it allows operation in several color spaces and bit depths natively, resulting in low memory and computational requirements. empty-page counts dark pixels of a black and white image and decides with a threshold whether the page is most probably empty, and thus can be removed from the image processing stream. OPTIONS
-i file, --input file Read image from the specified file. -m n, --margin n Set width of border margin to skip. For speed reasons, the margin has to be a multiple of 8. The default is 16. -p x, --percentage x Set fraction of permissible dark pixels. The default is 0.05 (5%). -h, --help Display help text and exit. EXAMPLES
$ empty-page -i test.tif The image has 75461 dark pixels from a total of 1060992 (7.11231%). non-empty EXIT STATUS
The exit status is 0 if the image is mostly white, 1 otherwise. SEE ALSO
exactimage(7) AUTHORS
Jakub Wilk <jwilk@debian.org> Wrote this manual page for the Debian system. http://www.exactcode.de/site/open_source/exactimage/ This manual page incorporates texts found on the ExactImage homepage. COPYRIGHT
This manual page was written for the Debian system (and may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 or (at your option) any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL-2. empty-page 09/09/2013 EMPTY-PAGE(1)