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1. Shell Programming and Scripting
Hi all,
I've multiple files. In this case 5. Space separated columns. Each file has 12 columns. Each file has 300-400K lines.
I want to get the output such that if a value in column 2 is present in all the files then get all the columns of that value and print it side by side.
Desired output... (15 Replies)
Discussion started by: genome
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2. Shell Programming and Scripting
Hi all,
Say i have multiple files x1 x2 x3 x4, all with common header (date, time, year, age),,
How can I merge them to one singe file "X" in shell scripting
Thanks for your suggestions. (2 Replies)
Discussion started by: msarguru
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3. Shell Programming and Scripting
hi i have two files and i wanted to join them using common column. try to do this using "join" command but that did not help.
File 1:
123 9a.vcf hy92.vcf hy90.vcf
Index Ref Alt Ref Alt Ref Alt
315 14 0 7 4 ... (6 Replies)
Discussion started by: empyrean
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4. Shell Programming and Scripting
I have the following records from multiple files.
415 A G
415 A G
415 A T
415 A .
415 A .
421 G A
421 G A,C
421 G A
421 G A
421 G A,C
421 G .
427 A C
427 A ... (3 Replies)
Discussion started by: empyrean
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5. UNIX for Dummies Questions & Answers
Hi,
I have 1000 text files in a folder that are labeled data1.txt all the way to data1000.txt. I want to write a small script that manipulates the text files in this way:
(1) cut the 2nd and 9th columns of the text files
(2) sort by the numerical value in the 9th column
(3) then save the rows... (3 Replies)
Discussion started by: evelibertine
3 Replies
6. UNIX for Dummies Questions & Answers
Dear all
I have big file with two columns
A_AA960715 GO:0006952
A_AA960715 GO:0008152
A_AA960715 GO:0016491
A_AA960715 GO:0007165
A_AA960715 GO:0005618
A_AA960716 GO:0006952
A_AA960716 GO:0005618
A_AA960716... (15 Replies)
Discussion started by: AAWT
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7. UNIX for Advanced & Expert Users
Hi
I have multiple files each with two columns and I need to combine all those file into a tab delimited file. (multiple entry with same name separated by a comma)
The content of the files are as follows:
---
file1.txt:
name var1
aaa xx
aaa gg
bbb yy
ddd zz
---
file2.txt
... (8 Replies)
Discussion started by: mary271
8 Replies
8. UNIX for Dummies Questions & Answers
I would like to write a for loop that does the following:
I have a file called X.txt and other files called 1.txt,2.txt, .....,1000.txt.
I want to substitute the 6th column of the file X.txt with 1.txt and store the output as X.1. Then I want to do the same with X.txt and 2.txt and store the... (1 Reply)
Discussion started by: evelibertine
1 Replies
9. UNIX for Dummies Questions & Answers
Hello,
I have 800 or so files with 3 columns each and >10000 lines each.
For each file and each line I would like to print the maximum column number for each line. Then I would like to 'paste' each of these files together (column-wise) so that the file with expression in label '_1' is the... (6 Replies)
Discussion started by: peanuts48
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10. Shell Programming and Scripting
I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ?
file1
ax100 20 30 40
ax200 22 33 44
file2
ax100 10 20 40
ax200 12 13 44
file2
ax100 0 0 4
ax200 2 3 4 (9 Replies)
Discussion started by: quincyjones
9 Replies
GIT-MERGE-INDEX(1) Git Manual GIT-MERGE-INDEX(1)
NAME
git-merge-index - Run a merge for files needing merging
SYNOPSIS
git merge-index [-o] [-q] <merge-program> (-a | [--] <file>*)
DESCRIPTION
This looks up the <file>(s) in the index and, if there are any merge entries, passes the SHA1 hash for those files as arguments 1, 2, 3
(empty argument if no file), and <file> as argument 4. File modes for the three files are passed as arguments 5, 6 and 7.
OPTIONS
--
Do not interpret any more arguments as options.
-a
Run merge against all files in the index that need merging.
-o
Instead of stopping at the first failed merge, do all of them in one shot - continue with merging even when previous merges returned
errors, and only return the error code after all the merges.
-q
Do not complain about a failed merge program (a merge program failure usually indicates conflicts during the merge). This is for
porcelains which might want to emit custom messages.
If git merge-index is called with multiple <file>s (or -a) then it processes them in turn only stopping if merge returns a non-zero exit
code.
Typically this is run with a script calling git's imitation of the merge command from the RCS package.
A sample script called git merge-one-file is included in the distribution.
ALERT ALERT ALERT! The git "merge object order" is different from the RCS merge program merge object order. In the above ordering, the
original is first. But the argument order to the 3-way merge program merge is to have the original in the middle. Don't ask me why.
Examples:
torvalds@ppc970:~/merge-test> git merge-index cat MM
This is MM from the original tree. # original
This is modified MM in the branch A. # merge1
This is modified MM in the branch B. # merge2
This is modified MM in the branch B. # current contents
or
torvalds@ppc970:~/merge-test> git merge-index cat AA MM
cat: : No such file or directory
This is added AA in the branch A.
This is added AA in the branch B.
This is added AA in the branch B.
fatal: merge program failed
where the latter example shows how git merge-index will stop trying to merge once anything has returned an error (i.e., cat returned an
error for the AA file, because it didn't exist in the original, and thus git merge-index didn't even try to merge the MM thing).
GIT
Part of the git(1) suite
Git 1.7.10.4 11/24/2012 GIT-MERGE-INDEX(1)