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sed to remove all lines in file that are not .vcf.gz extention

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Top Forums Shell Programming and Scripting sed to remove all lines in file that are not .vcf.gz extention
# 8  
Old 09-20-2016
Code:
sed  '/.vcf.gz$/!d;/genome/d' file
/output/Home/Auto_user_S5-00580-5-Medexome_66_030/plugin_out/variantCaller_out.40/IonXpress_007/TSVC_variants_IonXpress_007.vcf.gz
/output/Home/Auto_user_S5-00580-5-Medexome_66_030/plugin_out/variantCaller_out.40/IonXpress_008/TSVC_variants_IonXpress_008.vcf.gz

This User Gave Thanks to RudiC For This Post:
cmccabe
# 9  
Old 09-20-2016
Quote:
Originally Posted by RavinderSingh13
If there is always a file which is ending with any digit and then have .vcf.gzeg--> _007.vcf.gzor_008.vcf.gz.
Then following may help in same.
Code:
sed -n '/[0-9].vcf.gz$/p'   Input_file

Yes, either that or, if you want to filter out specifically the files *genome.vcf.gz, then:

Code:
sed '/vcf.gz$/!d;/genome.vcf.gz$/d' /path/to/input

I hope this helps.

bakunin
This User Gave Thanks to bakunin For This Post:
cmccabe
# 10  
Old 09-20-2016
Thank you all Smilie. I apologize for not being more clear in my post and will ensure that I am in the future, thanks again.
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