10 More Discussions You Might Find Interesting
1. Programming
Hi All,
I would like get the minimum value in the certain column with respect to other column.
For example, I have a text file like this.
ATOM 1 QSS SPH S 0 -2.790 -1.180 -2.282 2.28 2.28
ATOM 1 QSS SPH S 1 -2.915 -1.024 -2.032 2.31 2.31
ATOM 1 ... (4 Replies)
Discussion started by: bala06
4 Replies
2. Shell Programming and Scripting
Need your support for below. Please help to get required output
If column 5 is INV then only consider column1 and take out duplicates/identical rows/values from column1 and then put minimum value of column6 in column7 and put maximum value in column 8 and then need to do subtract values of... (7 Replies)
Discussion started by: as7951
7 Replies
3. Shell Programming and Scripting
Hello,
I need to find out the minimum and maximum values based on specific column, and then print out the entire row with the max value.
Infile.txt:
scf6 290173 290416 . + X_047241 T_00113118-1
scf6 290491 290957 . + X_047241 T_00113118-2
scf6 290898 290957 . + X_047241 T_00113119-3
scf6... (2 Replies)
Discussion started by: yifangt
2 Replies
4. Shell Programming and Scripting
input
1 2 3 4 5 2 8
2 1 1 1 4 2 1
5 4 4 4 2 1 3
2 2 6 7 4 5 4
5 5 5 4 3 3 5
I woud like to print a min of each row such that my output would look like
1
1
1
2
3 (5 Replies)
Discussion started by: johnkim0806
5 Replies
5. Shell Programming and Scripting
Hi Friends,
I have an input file like this
chr1 100 200 1 2 3 4
chr1 150 200 4 5 6 7
chr2 300 400 9 6 7 1
chr2 300 410 -10 21 -11 13
chr3 700 900 -21 -22 130 165
Now, my output file is
chr1 100 200 1
chr1 150 200 4
chr2 300 400 1
chr2 300 410 10
chr3 700 900 21
Remove... (5 Replies)
Discussion started by: jacobs.smith
5 Replies
6. Shell Programming and Scripting
Hello,
I have this file file1.csv
Element1;23-10-2012;1,450;1,564;1,428
Element2;23-10-2012;1,448;1,565;1,427
Element3;23-10-2012;1,453;1,570;1,424
Element4;23-10-2012;1,428;1,542;1,405
Element5;23-10-2012;1,461;;1,453
Element6;23-10-2012;1,438;1,555;1,417... (6 Replies)
Discussion started by: saba01
6 Replies
7. Shell Programming and Scripting
Hi all,
I am having multiple files with the pattern given below:
I need to find the minimum value of 5th column if column 1 is x and 2nd column is awh or vbn or ... (20 different strings).
the output must be like:
Kindly help me to figure out this prob....
Thanks in... (4 Replies)
Discussion started by: CAch
4 Replies
8. Shell Programming and Scripting
Hi there
I have generated a column containing 100.000 values. Sample:
94.971
101.468
73.120
100.601
102.329
I need to find the minimum value in this file and I must know which row it is in (no sorting).
I hope you can help!
Thanks! (16 Replies)
Discussion started by: cno
16 Replies
9. Shell Programming and Scripting
Input
10 8 20 8 10 9 20 9
10 12 20 19 10 10 20 40
Output1
10 8 2 20 8 12 10 9 1 20 9 11
10 12 -2 20 19 1 10 10 0 20 40 -20
Output2
10 9 ... (0 Replies)
Discussion started by: repinementer
0 Replies
10. Shell Programming and Scripting
Hi,
Suppose I have a space delimited file like this:
Serial# 1970 1971 1972 1973 1974
193532 21 2 X X X
200201 20 30 X X 40
200201 X X 13 15 X
393666 66 3 X X 5 ... (2 Replies)
Discussion started by: grossgermany
2 Replies
BP_PAIRWISE_KAKS(1p) User Contributed Perl Documentation BP_PAIRWISE_KAKS(1p)
NAME
pairwise_kaks - script to calculate pairwise Ka,Ks for a set of sequences
SYNOPSIS
pairwise_kaks.PLS -i t/data/worm_fam_2785.cdna [-f fasta/genbank/embl...] [-msa tcoffee/clustal] [-kaks yn00/codeml]
DESCRIPTION
This script will take as input a dataset of cDNA sequences verify
that they contain no stop codons, align them in protein space,
project the alignment back into cDNA and estimate the Ka
(non-synonymous) and Ks (synonymous) substitutions based on the ML
method of Yang with the PAML package.
Requires:
* bioperl-run package
* PAML program codeml or yn00
* Multiple sequence alignment programs Clustalw OR T-Coffee
Often there are specific specific parameters you want to run when you
a computing Ka/Ks ratios so consider this script a starting point and
do not rely it on for every situation.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Jason Stajich jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_PAIRWISE_KAKS(1p)