Node selection with bsub

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Bsub job does not execute the script

Hello, When I'm trying to send bsub job using script that executes fine in command line, I get nothing. I do this for testing purposes, and the script scr_test is just one line: pwd > outfile So when I'm executing it in command line: $ ./scr_test it works fine producing the outfile with...

2. Shell Programming and Scripting

How to create a variable without multiple concats in a perl scripts that makes a bsub?

The red text at the bottom represents the three lines I want to address. I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion...

3. UNIX for Dummies Questions & Answers

Bsub command

Hi everyone, I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me?

4. HP-UX

Mount FIle systems from node-1 onto node-2

Hi, We have HP UX service guard cluster on OS 11.23. Recently 40+ LUNs presented to both nodes by SAN team but I was asked to mount them on only one node. I created required VGs/LVs, created VxFS and mounted all of them and they are working fine. Now client requested those FS on 2nd node as...

5. UNIX for Dummies Questions & Answers

Bsub array problem

I'm trying to run some computations on a cluster and have found that a bsub array is what I need.. So I tried running a simple example I found bsub -J "myArray" echo "Job \$LSB_JOBINDEX" This should create 10 jobs that output "Job 1" "Job 2" .. etc. But when I run this from afs space I get...

6. Homework & Coursework Questions

Accessing one UNIX node from another node of the same server

Hi Experts, I am in need of running a script from one node say node 1 via node 2. My scheduling tool dont have access to node2 , so i need to invoke the list file from node1 but the script needs to run from node2. because the server to which i am hitting, is having access only for the node...

7. UNIX for Dummies Questions & Answers

qsub equivalent of bsub command

"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \"" Can anybody please tell me the qsub equivalent for this command? ---------- Post updated at 06:48 AM...

8. Shell Programming and Scripting

Passing a variable to #BSUB -n in a LSF file

Hi There! I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like: set NPROC = 10 and later on call BSUB using something like: #BSUB -n $NPROC unfortunately for me, this throws an error: ...

9. Solaris

SVM metaset on 2 node Solaris cluster storage replicated to non-clustered Solaris node

Hi, Is it possible to have a Solaris cluster of 2 nodes at SITE-A using SVM and creating metaset using say 2 LUNs (on SAN). Then replicating these 2 LUNs to remote site SITE-B via storage based replication and then using these LUNs by importing them as a metaset on a server at SITE-B which is...

10. UNIX for Dummies Questions & Answers

Writing a script to work sequentially with bsub

Hi, I am REALLY a newbie of Unix: hope this question is not too odd. Here is my problem: I have to submit jobs to a remote platform (an IBM BCX/5120). To submit I have tobsub < filename.jcf and the .jcf file has usually the following content: #!/bin/bash #BSUB <commands of the bsub>...

LEARN ABOUT DEBIAN

condor_wait

condor_wait(1) General Commands Manual condor_wait(1)

Name
condor_wait Wait - for jobs to finish

Synopsis
condor_wait [-help -version]

condor_wait[-debug] [-wait seconds] [-num number-of-jobs] log-file[job ID]

Description
condor_waitwatches a user log file (created with the logcommand within a submit description file) and returns when one or more jobs from
the log have completed or aborted.

Because condor_waitexpects to find at least one job submitted event in the log file, at least one job must have been successfully submitted
with condor_submitbefore condor_waitis executed.

condor_waitwill wait forever for jobs to finish, unless a shorter wait time is specified.

Options
-help

Display usage information

-version

Display version information

-debug

Show extra debugging information.

-wait seconds

Wait no more than the integer number of seconds. The default is unlimited time.

-num number-of-jobs

Wait for the integer number-of-jobsjobs to end. The default is all jobs in the log file.

log file

The name of the log file to watch for information about the job.

job ID

A specific job or set of jobs to watch. If the job IDis only the job ClassAd attribute ClusterId , then condor_wait waits for all jobs
with the given ClusterId . If the job IDis a pair of the job ClassAd attributes, given by ClusterId . ProcId , then condor_wait waits
for the specific job with this job ID. If this option is not specified, all jobs that exist in the log file when condor_wait is invoked
will be watched.

General Remarks
condor_waitis an inexpensive way to test or wait for the completion of a job or a whole cluster, if you are trying to get a process outside
of Condor to synchronize with a job or set of jobs.

It can also be used to wait for the completion of a limited subset of jobs, via the -numoption.

Examples
condor_wait logfile

This command waits for all jobs that exist in logfile to complete.

condor_wait logfile 40

This command waits for all jobs that exist in logfile with a job ClassAd attribute ClusterId of 40 to complete.

condor_wait -num 2 logfile

This command waits for any two jobs that exist in logfile to complete.

condor_wait logfile 40.1

This command waits for job 40.1 that exists in logfile to complete.

condor_wait -wait 3600 logfile 40.1

This waits for job 40.1 to complete by watching logfile , but it will not wait more than one hour (3600 seconds).

Exit Status
condor_waitexits with 0 if and only if the specified job or jobs have completed or aborted. condor_waitreturns 1 if unrecoverable errors
occur, such as a missing log file, if the job does not exist in the log file, or the user-specified waiting time has expired.

Author
Condor Team, University of Wisconsin-Madison

See the Condor Version 7.8.2 Manualor http://www.condorproject.org/licensefor additional notices. condor-admin@cs.wisc.edu

September 2012 condor_wait(1)

Shell Programming and Scripting