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Thank you very much for all your help :).

Makes sense now, thank you.

In order to capture BRCA2 from file1 with BRCA 1, BRCA2 from file2, would:


gsub(" ","",$5) #removing white space
have to be to capture the matching name...

I made a typo in on of the file1 lines, BCRA1 should be BCRA2.

file1

BRCA2
BCR
SCN1A
fbn1
current output:

awk 'BEGIN{FS=OFS="\t"}
{$0=toupper($0)}
FNR==NR{
if(NR>1 && ($7 ~ "FULL...

Trying to use awk to match the contents of each line in file1 with $5 in file2. Both files are tab-delimited and there may be a space or special character in the name being matched in file2, for...