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You could go thru all the values in $5 using comma , and slash / as separators.

awk 'BEGIN{FS=OFS="\t"}
{$0=toupper($0)}
FNR==NR{
if(NR>1 && ($7 ~ "FULL GENE SEQUENC")) {
gsub("...

Trying to match full gene sequencing and full gene sequence as this is in the data.

Try these changes:

awk 'BEGIN{FS=OFS="\t"}
{$0=toupper($0)}
FNR==NR{
if(NR>1 && ($7 ~ "FULL GENE SEQUENC")) {
gsub(" ","",$5) #removing white space
...