9 More Discussions You Might Find Interesting
1. Programming
Hello
I am using gfortran and I intended to do thiis:
Module variables
character(len=:), dimension(:), allocatable, array
end module variables
Sub test
use variables
integer (max_len)
max_len=len_trim("something here")
if(.not.allocated(array))... (1 Reply)
Discussion started by: pepe
1 Replies
2. Programming
I have code that works fine in ifort. But when trying to run on gfortran 4.7.1 (which does support quads and has no problem with real * 16) I can't cast an integer variable to a quad precision float (real*16) using something like:
factq(i) = factq(i-1) * qfloat(i)
Finding a list of the new... (2 Replies)
Discussion started by: vibrantcascade
2 Replies
3. AIX
it shows up after the upgrade to SF240_415, after 2 hrs.
amber light shows up on the led of 9111-520, but alog shows:
everything seems to work, not sure what's going on.. (6 Replies)
Discussion started by: ppchu99
6 Replies
4. Programming
Hello everyone,
I'm trying since a few days to compile a f90 program with gfortran (on Ubuntu) with a makefile. The fortran program calls 2 routines written in C.
Here is my makefile:
FC = gfortran
SFC = gfortran
FFLAGS = -ffree-form -O... (21 Replies)
Discussion started by: leroygr
21 Replies
5. Programming
I am a INTEL fortran user recently migrated to linux and installed gfortran on my system.
I run numerical models as part of my research.
my question is on optimization of the fortran code.
I used the - vectorize option to compile for reducing the run time considerably and was happy. But... (1 Reply)
Discussion started by: schamarthi1
1 Replies
6. Programming
Hi,
I am trying to run a simple f77 program on gfortran. Program is as follows.
program trial
implicit real*8 (a-h,o-z)
common/var/a(2),b,c(4),d
a=(/0,0/)
b=0
c=(/0,0,0,0/)
d=0
call add(a,b,c,d)
... (1 Reply)
Discussion started by: anshulfy
1 Replies
7. Programming
Hi!
I have a program in fortran77. This program was compiled with pgf90, but now, I need compiled it with gfortran.
I show a bit of code.
program hello
PARAMETER(a=100)
integer a
write(*,*)'value ', a
end program hello
What's the problem?
Thanks (2 Replies)
Discussion started by: kekaes
2 Replies
8. Solaris
hi all,
we've got an amber maintenance light on the front of our Netra-t4. I can't find out what's causing this issue. I've logged into the lom, and found the following. There's nothing in messages or prtdiag. Disks appear to be ok. Are there any other lom commands that can help?
... (6 Replies)
Discussion started by: badoshi
6 Replies
9. SuSE
Ok, so we get reports from operations after they do walk throughs about servers with amber or red lights showing. They want us to resolve the issues. On Solaris I can run prtdiag to identify the amber lights and clear them (replace hardware or "reboot" the daemon).
How do I remotely figure out... (1 Reply)
Discussion started by: BOFH
1 Replies
PYMOL(1) User commands PYMOL(1)
NAME
pymol - free and flexible molecular graphics and modelling package
SYNOPSIS
pymol [options] [files]
DESCRIPTION
Over the years, PyMOL has become a capable molecular viewer with support for animations, high-quality rendering, crystallography, and other
common molecular graphics activities. It has been adopted by many hundreds (perhaps even thousands) of scientists spread over thirty coun-
tries. However, PyMOL is still very much a work in progress, with development expected to continue for years to come.
OPTIONS
These options are currently supported:
-2 Start in two-button mouse mode.
-c Command line mode, no GUI. For batch opeations.
-d string
Run pymol command string upon startup.
-e Start in full-screen mode.
-f #line
Controls display of commands and feedback in OpenGL (0=off).
-g file.png
Write a PNG file (after evaluating previous arguments)
-i Disable the internal OpenGL GUI (object list, menus, etc.)
-l file.py
Spawn a python program in new thread.
-o Disable security protections for session files.
-p Listen for commands on standard input.
-q Quiet launch. Suppress splash screen & other chatter.
-r file.py
Run a Python program (in __main__) on startup.
-s script
Save commands to this PyMOL script or program file.
-t Use Tcl/Tk based external GUI module (pmg_tk).
-u script
Load and append to this PyMOL script or program file.
-x Disable the external GUI module.
-B Enable blue-line stereo signal (for Mac stereo)
-G Start in Game mode.
-M Force mono even when hardware stereo is present.
-R Launch Greg Landrum's XMLRPC listener.
-S Force and launch in stereo, if possible.
-X int -Y int -W int -H int -V int
Adjust window geometry.
All files provided will be loaded or run after PyMOL starts. They can have one of the following extensions:
.pml PyMOL command script to be run on startup
.py[cm] Python program to be run on startup
.pdb Protein Data Bank format file to be loaded on startup
.mmod Macromodel format to be loaded on startup
.mol MDL MOL file to be loaded on startup
.sdf MDL SD file to be parsed and loaded on startup
.xplor X-PLOR Map file (ASCII) to be loaded on startup
.ccp4 CCP4 map file (BINARY) to be loaded on startup
.cc[12] ChemDraw 3D cartesian coordinate file
.pkl Pickled ChemPy Model (class "chempy.model.Indexed")
.r3d Raster3D file
.cex CEX file (Metaphorics)
.top AMBER topology file
.crd AMBER coordinate file
.rst AMBER restart file
.trj AMBER trajectory
.pse PyMOL session file
.phi Delphi/Grasp Electrostatic Potential Map
For a list of options, you can also enter the following in the command line of pymol:
help launching
COMMANDS
Please refer to PyMols online documentation at http://www.pymolwiki.org/index.php/Category:Commands or its internal help for a command ref-
erence.
AUTHOR
This manpage was written by Daniel Leidert <daniel.leidert@wgdd.de> for the Debian distribution (but may be used by others).
2008-05-06 PYMOL(1)
