massxpert-data(7) [debian man page]

MASSXPERT(7)						 Miscellaneous Information Manual					      MASSXPERT(7)

NAME

       massxpert-data - massXpert mass spectrometry software package (data files)

DESCRIPTION

       This  manual  page  documents briefly the massxpert-data package. This package contains the architecture-independent data that are required
       for the proper functioning of the massxpert program (massxpert-bin package). The data contained in the package are  about  atom	definition
       and for polymer chemistry definition (proteins, saccharides, DNA, RNA).

BIBLIOGRAPHICAL REFERENCE TO BE CITED

       F.  Rusconi (2009) massXpert 2: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spec-
       trometric data.	Bioinformatics, 25:2741-2742. doi:10.1093/bioinformatics/btp504.

SEE ALSO

       massxpert(1) massxpert-doc(7).

       The program is documented fully in the massXpert User Manual, that is packaged in massxpert-doc. That manual is available in the form of  a
       PDF-formatted file (/usr/share/doc/massxpert-doc/pdf/massxpert.pdf).

AUTHOR

       This  manual page was written by Filippo Rusconi <rusconi-debian@laposte.net>. Permission is granted to copy, distribute and/or modify this
       document under the terms of the GNU General Public License, Version 3, published by the Free Software Foundation.

	On  a  Debian  system  the  complete  text  of	the  GNU  General  Public  License   version   3   can	 be   found   in   the	 file	`-
       /usr/share/common-licenses/GPL-3'.

								  September 2009						      MASSXPERT(7)

MMASS(1)						      General Commands Manual							  MMASS(1)

NAME

       mmass - a free mass spectrometry tool for proteomics

SYNOPSIS

       mmass

DESCRIPTION

       mmass  is  a free mass spectrometry tool for proteomics. Its main feature is its capability to load mass spectral data in its powerful mass
       spectrum viewer. The program can load data in the following formats: mzData, mzXML, raw text. The mass spectrum viewer allows performing  a
       large  number of operations commonly required when analyzing mass spectrometry data (zoom, pan, rapid delta-mass calculations, peak picking
       and so forth). The program will allow defining peak lists, recalibrating spectra, performing some protein-only simulations  and	doing  on-
       line Mascot searches.

BIBLIOGRAPHICAL REFERENCES TO BE CITED

       Strohalm  M, Kavan D, Novak P, Volny M, Havlicek V: mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectromet-
       ric Data. Anal Chem 82 (11), 4648-51 (2010). DOI:10.1021/ac100818g

       Strohalm M, Hassman M, Koata B, Kodiek M: mMass data miner: an open source alternative for mass spectrometric data analysis.  Rapid  Commun
       Mass Spec 22 (6), 905-908 (2008). DOI:10.1002/rcm.3444

SEE ALSO

       mmass-modules (3), mmass-doc(7).

AUTHORS

       Martin Strohalm <support@mmass.org>
	   Program author (contact him via http://www.mmass.org website's form).

       Filippo Rusconi <rusconi-debian@laposte.net>
	   Man-page author for the Debian distribution.

COPYRIGHT

       Copyright (C) 2005-2010 Martin Strohalm
       Copyright (C) 2010,2011 Filippo Rusconi

       This  manual page was written by Filippo Rusconi <rusconi-debian@laposte.net> for the Debian system (but may be used by others). Permission
       is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 3, published  by  the
       Free Software Foundation.

	On   a	 Debian   system   the	 complete   text   of	the   GNU  General  Public  License  version  3  can  be  found  in  the  file	`-
       /usr/share/common-licenses/GPL-3'.

								   November 2009							  MMASS(1)