SWISS::CCrna_editing(3pm) User Contributed Perl Documentation SWISS::CCrna_editing(3pm)Name
SWISS::CCrna_editing
Description
SWISS::CCrna_editing represents a comment on the topic 'RNA EDITING' within a Swiss-Prot or TrEMBL entry as specified in the user manual
http://www.expasy.org/sprot/userman.html . Comments on other topics are stored in other types of objects, such as SWISS::CC (see
SWISS::CCs for more information).
Collectively, comments of all types are stored within a SWISS::CCs container object.
Inherits from
SWISS::ListBase.pm
Attributes
topic
The topic of this comment ('RNA EDITING').
note
The Note of this comment, if any.
term
A string such as "Undetermined" or "Not_applicable", if any.
elements
An array of [position, evidence_tags], if any.
Standard methods
new
fromText
toString
Returns a string representation of this comment.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 121:
=back doesn't take any parameters, but you said =back =head1 Methods
perl v5.10.1 2006-01-26 SWISS::CCrna_editing(3pm)
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SWISS::DTs(3pm) User Contributed Perl Documentation SWISS::DTs(3pm)Name
SWISS::DTs
Description
SWISS::DTs represents the DT lines within an Swiss-Prot + TrEMBL entry as specified in the user manual
http://www.expasy.org/sprot/userman.html .
Inherits from
SWISS::BaseClass.pm
Attributes
"CREATED_date"
Creation date
"ANN_date"
Last annotation update
"SQ_date"
Last Sequence update
"CREATED_rel"
Created for release
"ANN_rel"
Last annotation for release
"SQ_rel"
Last sequence update for release
"ANN_version"
Version number for entry annotation
"SQ_version"
Version number for sequence
Methods
Standard methods
new
fromText
toText
sort
Writing methods
set_Created ($date, $release)
set_AnnotationUpdate ($date, $release[, $version])
set_SequenceUpdate ($date, $release[, $version])
TRANSITION
The format of the DT line will change in early 2004 from:
DT 01-JUL-1993 (Rel. 26, Created)
DT 01-JUL-1993 (Rel. 26, Last sequence update)
DT 28-FEB-2003 (Rel. 41, Last annotation update)
to:
DT 01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1993, sequence version 36.
DT 28-FEB-2003, entry version 54.
This module supports both formats. To convert an entry from the old to the new format, do:
$entry->DTs->CREATED_rel("UniProtKB/Swiss-Prot");
$entry->DTs->ANN_version(54);
$entry->DTs->SQ_version(36);
perl v5.10.1 2008-07-11 SWISS::DTs(3pm)
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