Linux and UNIX Man Pages

Linux & Unix Commands - Search Man Pages

ace::graphics::glyph::segments(3pm) [debian man page]

Ace::Graphics::Glyph::segments(3pm)			User Contributed Perl Documentation		       Ace::Graphics::Glyph::segments(3pm)

NAME
Ace::Graphics::Glyph::segments - The "discontinuous segments" glyph SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>. DESCRIPTION
This glyph draws a sequence feature that consists of multiple discontinuous segments, such as the exons on a transcript or a gapped alignment. The representation is a series of filled rectangles connected by line segments. The features passed to it must either respond to the Bio::SequenceFeatureI-style subSeqFeatures() method, or the AcePerl/Das-style segments() or merged_segments() methods. OPTIONS In addition to the common options, this glyph recognizes the b<-stranded> argument. If b<-stranded> is true and the feature is an alignment (has the target() method) then the glyph will draw little arrows in the segment boxes to indicate the direction of the alignment. BUGS
Please report them. SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript, AUTHOR
Lincoln Stein <lstein@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. perl v5.14.2 2001-09-17 Ace::Graphics::Glyph::segments(3pm)

Check Out this Related Man Page

Ace::Graphics::Glyph::ex(3pm)				User Contributed Perl Documentation			     Ace::Graphics::Glyph::ex(3pm)

NAME
Ace::Graphics::Glyph::ex - The "X" glyph SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>. DESCRIPTION
This glyph draws an "X". OPTIONS In addition to the common options, the following glyph-specific options are recognized: Option Description Default ------ ----------- ------- -point Whether to draw an "X" the feature width scaled width of the feature or with arm length point. BUGS
Please report them. SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript, AUTHOR
Allen Day <day@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. perl v5.14.2 2001-06-04 Ace::Graphics::Glyph::ex(3pm)
Man Page

7 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Send Mail NOQUEUE low on space

Need help to resolve this message "NOQUEUE: low on space (have 18, SMTP-DAEMON needs 101 in /var/spool/mqueue)" Attached capture file from server HPUX 10.2 Ace root@PS01 : Aug 13 18:27:30 SANG last message repeated 7 times Aug 13 18:27:45 PS01 sendmail: NOQUEUE: low on space (have 18,... (2 Replies)
Discussion started by: real-chess
2 Replies

2. UNIX for Advanced & Expert Users

SAM Error non-zero exit status

Our machines HP-UX 10.20 Ace, Attempting to run various areas of SAM such as Backup and Restore, Printers and Plotters any areas of Time, etc give errors like the following: unexpected exit: process /usr/sam/lbin/samx/ -C -p 1358 -s br_sa_bdevs /usr/sam/lib///br.ui exited with a non-zero exit... (0 Replies)
Discussion started by: real-chess
0 Replies

3. Shell Programming and Scripting

Help needed in removing intermediate segments from a pipe delimited segment file

Hi, I just stuckup in doing some regular expressions on a file. I have data which has multiple FHS and BTS segments like: FHS|12121|LOCAL|2323 MSH|10101|POTAMAS|2323 PID|121221|THOMAS|DAVID|23432 OBX|2342|H1211|3232 BTS|0000|MERSTO|LIABLE FHS|12121|LOCAL|2323 MSH|10101|POTAMAS|2323... (3 Replies)
Discussion started by: naren_0101bits
3 Replies

4. Shell Programming and Scripting

Splitting a file by arbitrary values

How do I split a file into unequal line number segments? For example, I have a 100,000 line file that I need to split into 4 or 5 segments and the segments are not uniform, so split will not work in this case. The five segments might be: 27,000 44,512 13,542 2,344 & 12,602. I can accomplish... (4 Replies)
Discussion started by: sitney
4 Replies

5. Shell Programming and Scripting

[Perl] Strange problem with array

Hi, I have a strange problem with arrays in Perl. That is to say, for me it is strange and perhaps there is a special reason for it that I do not know of. Not a real Perl Ace. This is the program, as an example: #!/usr/bin/perl -w #-d use strict; my $pu; my $pu_list_cmd; my... (2 Replies)
Discussion started by: ejdv
2 Replies

6. Programming

Need help with Card Dealing Program

I'm currently making a card dealing program, it is suppose to display a list of cards like this: "Ace of Heart, is red" "Two of Heart, is red" . . "Ace of Spade, is black" and so on for all suits and numbers. here is my current code: #include <stdio.h> #include <stdlib.h> #include... (3 Replies)
Discussion started by: Izzy123
3 Replies

7. SuSE

TCP segments retransmission

Hi all, I got an application that is running on SUSE Linux. I would like to get some data about the number of TCP segments retransmission on a particular interface. Is there any way I can get that? Thanks, (2 Replies)
Discussion started by: Pouchie1
2 Replies