TREEVIEW X(1) User Manuals TREEVIEW X(1)NAME
TreeView_X - displays and prints phylogenetic trees
SYNOPSIS
tv [filename]
DESCRIPTION
tv is the program that starts the TreeView X GUI.
TreeView X is an open source and multi-platform program to display phylogenetic trees. It can read and display NEXUS and Newick format tree
files (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other programs). It allows one to order the branches of the trees, and to
export the trees in SVG format.
If started from the command line with filename as an argument, TreeView X will open the tree stored in filename.
SEE ALSO
At present there is is no documentation for TreeView X. In the meantime please see the online documentation for TreeView (remember that
TreeView X has only a subset of the features of TreeView). http://taxonomy.zoology.gla.ac.uk/rod/treeview/treeview_manual.html
REFERENCE
Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences
12: 357-358.
AUTHOR
TreeView X was written by Rod Page (r.page@bio.gla.ac.uk) URL: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx.
This manual page was written by Charles Plessy (plessy@debian.org) for the Debian(TM) system (but may be used by others).
Permission is granted to copy, distribute and/or modify TreeView X and this document under the terms of the GNU General Public License,
Version 2 or any later version published by the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License version 2 can be found in /usr/share/common-licenses/GPL-2.
TreeView X 0.5 06/23/2011 TREEVIEW X(1)
Check Out this Related Man Page
TREE-PPUZZLE(1) General Commands Manual TREE-PPUZZLE(1)NAME
tree-ppuzzle - Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)
SYNOPSIS
tree-ppuzzle
DESCRIPTION
This manual page documents briefly the tree-ppuzzle command. This manual page was written for the Debian GNU/Linux distribution because
the original program does not have a manual page.
TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!
tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large
data sets and automatically assigns estimations of support to each internal branch. TREE-PPUZZLE also computes pairwise maximum likelihood
distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addi-
tion, TREE-PPUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without comput-
ing an overall tree and to visualize the phylogenetic content of a sequence alignment.
This program is the paralelized version of tree-puzzle.
OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.
SEE ALSO phylip(1), treetool(1). tree-puzzle(1).
This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others).
April 20, 2001 TREE-PPUZZLE(1)
i am trying to write a program in order to learn how to work with trees and especially 2-4 trees.
the general idea is that each node is represented by 4 cells and 5 pointers? (maybe 2 arrays then? )
let's suppose that we insert simply int numbers in all cells.
firstly we initialize the root... (2 Replies)
Hi. I have a problem, could you help me ?
Situation:
there are alot of files in directory_1, with the names like "notneeded1blabla.bla", "notveryneededblabla.gla".
there is directory_2 that has directories with names like that: "bla_needed1", "blab_veryneeded".
What i need so much is to place... (7 Replies)
Hi,
I have got a folder structure in Linux (RHEL 4) and want to get treeview of he same.
I got the 'tree' command for getting the result but my Linux has not got tree command.
I had downloaded the tree package and tried to install. It required some dependency packages like glibc. I tried to... (2 Replies)
Dear all,
I have >5000 files in newick tree format (which generally used for representing phylogenetic relationships) something like below.
... (3 Replies)